Locus 2838

Sequence ID 2L_DroMel_CAF1
Location 8,134,118 – 8,134,236
Length 118
Max. P 0.951982
window4510

overview

Window 0

Location 8,134,118 – 8,134,236
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 79.44
Mean single sequence MFE -27.36
Consensus MFE -16.03
Energy contribution -17.03
Covariance contribution 1.00
Combinations/Pair 1.13
Mean z-score -2.36
Structure conservation index 0.59
SVM decision value 1.42
SVM RNA-class probability 0.951982
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8134118 118 + 22407834
AUUGUUGAUUUCUGAAUGUUGGUAUUUUUCCAGGCCUUA--GACCGCAACAAAAAAUACCGCAACGGAGCAGUUAUCGACUAUUCGAUAAGCUGAAACAGUAAUUCGAUUUAUGAAAACC
...((((((..(((..(((((((((((((....((....--....))....)))))))))..))))...)))..))))))...((((...((((...))))...))))............ ( -28.00)
>DroSec_CAF1 2798 104 + 1
AUUGUUGCCUUCUGAAUGU-GGUAUUU-UACAGGCC--------------AAAAAAUACCGCAACAGAGCAGCUAUCGACUAAUCGAUAAGCUGAAACAGUAAUUCGAUAUAUGAAUACC
((((((...(((((..(((-(((((((-(.......--------------..))))))))))).)))))((((((((((....))))).))))).)))))).(((((.....)))))... ( -29.90)
>DroSim_CAF1 2793 117 + 1
AUUGUUGCUUUCUGAAUGUUGGUAUUU-UCCAGGCCCUA--GACAGCAACAAAAAAUACCGCAACAGAGCAGCUAUCGACUAAUCGAUAAGCUGAAACAGUAGUUCGAUAUAUGAAAACC
.((((((((.((((....((((.....-.))))....))--)).))))))))...(((.((.(((....((((((((((....))))).)))))........))))).)))......... ( -28.80)
>DroEre_CAF1 2879 103 + 1
UUUGUUUCUUUCUAAACGUCGGUAUU----------------UUCGCGAC-AAAAAUACCGCAAAAGAGCAGUUAUCGACUAUUCGAUAGGCUGAAACAGUAAUUCGAUAUAUGAAAACC
.(((((((.........(.(((((((----------------((......-.)))))))))).....(((...((((((....)))))).)))))))))).................... ( -22.90)
>DroYak_CAF1 2811 116 + 1
--UAUUAAUUUUUGAAUGUCGGUAUU--UCUAGGUAUUUCUUUUCGCAACGAAAAAUACCGCAAGAGAGCAGCUAUCGACUAUUCGAUAGGCUGAAACAGUAAUUCGAUAAAUGAAAACC
--......((((((..((((((..((--(((.(((((((...((((...)))))))))))...))))).((((((((((....)))))).))))..........))))))..)))))).. ( -27.20)
>consensus
AUUGUUGCUUUCUGAAUGUCGGUAUUU_UCCAGGCC_U____ACCGCAACAAAAAAUACCGCAACAGAGCAGCUAUCGACUAUUCGAUAAGCUGAAACAGUAAUUCGAUAUAUGAAAACC
((((((...(((((..(((.(((((((..........................)))))))))).)))))((((((((((....))))).))))).))))))................... (-16.03 = -17.03 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:30 2006