Locus 2837

Sequence ID 2L_DroMel_CAF1
Location 8,131,831 – 8,131,927
Length 96
Max. P 0.540356
window4509

overview

Window 9

Location 8,131,831 – 8,131,927
Length 96
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 86.02
Mean single sequence MFE -30.28
Consensus MFE -21.81
Energy contribution -22.53
Covariance contribution 0.73
Combinations/Pair 1.20
Mean z-score -2.63
Structure conservation index 0.72
SVM decision value 0.01
SVM RNA-class probability 0.540356
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8131831 96 - 22407834
CGCACC-----CACUCUCACCUGUGAUGCCAUCAACACUCUGACCAUACUGCUGCUCCUCCAGCAGCUCAUCCGCCAUAACAUUGGGCGUUUGGUCAGGGC
.(((..-----(((........))).)))........(((((((((.((.((((((.....))))))......(((.........))))).))))))))). ( -33.60)
>DroSec_CAF1 411 94 - 1
CGCACC-----CAC--UCACCUGUGAUGCCAUCAACACUCUGGCCAUACUGCUGCUCCUCCAGCAGCUCAUCCGCCAUAACAUUGGGCGUUUGGUCAGGGC
.(((..-----(((--......))).)))........(((((((((.((.((((((.....))))))......(((.........))))).))))))))). ( -33.20)
>DroSim_CAF1 426 94 - 1
CGCACC-----CAC--UCACCUGUGAUGCCAUCAACACUCUGGCCAUACUGCUGCUCCUCCAGCAGCUCAUCCGCCAUGACAUUGGGCGUUUGGUCAGGCC
.(((..-----(((--......))).))).........((((((((.((.((((((.....))))))......(((.........))))).)))))))).. ( -30.30)
>DroEre_CAF1 410 94 - 1
UGCACC-----CAC--UUACCGGUUAUGGCAUCAACACCCUGGCCAUACUGCUGCUCCUCCAGCAGUUCAUCAGCCAUGACAUUGGGCGUCUGCUCGGGGC
.((.((-----(..--......((((((((.(((......)))....(((((((......)))))))......))))))))...((((....))))))))) ( -32.60)
>DroYak_CAF1 426 94 - 1
CGCACC-----CAC--UAACCUGUUAUGCCAUCAACACUCUGGCCAUACUGCUGCUCCUCCAGCAGUUCAUCCGCCAUGACAUUGGGCGUCUGCUCAGGGC
......-----...--...((((..(((((..(((...((((((...(((((((......)))))))......)))).))..)))))))).....)))).. ( -26.50)
>DroPer_CAF1 3102 96 - 1
CAGACCGACAAUAC--UCACCAGUGAUACCAUCAACACUUUGGCCAUACUGCUGCUCCUCGAGCAUCUCUUCGGCAAUGGCAUUGGGCGUCUGGUCAU---
..(((((((.....--...((((((...(((((((....)))(((.....(.(((((...))))).).....))).))))))))))..))).))))..--- ( -25.50)
>consensus
CGCACC_____CAC__UCACCUGUGAUGCCAUCAACACUCUGGCCAUACUGCUGCUCCUCCAGCAGCUCAUCCGCCAUGACAUUGGGCGUCUGGUCAGGGC
.....................................(((((((((.((.((((((.....))))))......(((.........))))).))))))))). (-21.81 = -22.53 +   0.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:29 2006