| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,119,993 – 8,120,113 |
| Length | 120 |
| Max. P | 0.661782 |
| Location | 8,119,993 – 8,120,113 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.00 |
| Mean single sequence MFE | -38.41 |
| Consensus MFE | -23.37 |
| Energy contribution | -24.04 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.661782 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8119993 120 + 22407834 AGAUCCACACACAGCUCGCCCAGCUUGGCGUACAAGCACAUCCACAACUUAUCGAACUGCGGCAUCUUCACUGUGCCUGGGAAGUCGGGCAGAAUGGACACAUCCUGCAGCUGAGUGGAC ...(((((...(((((..(((((((((.....))))).......................(((((.......))))))))).......((((.(((....))).))))))))).))))). ( -39.60) >DroVir_CAF1 85434 120 + 1 AGAUCCACACACAGCUCGCCCAGUUUGGCGUACAGGCACAUCCACAGCUUGUCAAACUGAGGCAUUUUAAGGGUGCCGGGAAAGUCCGGCAAUAUGGCCACAUCCUCCAGCUGUGUUGAU .....((.((((((((.(((((((((((((....(((.........))))))))))))).))).......((((((((((....)))))))..(((....)))..))))))))))))).. ( -45.30) >DroGri_CAF1 78482 120 + 1 AAGUCGACGCACAAUUCACCCAGUUUGGCAUACAGACACAUCCACAGCUUGUCGAAUUGUGGCAUUUUGACUGUACCCGGAAAGUCCGGCAAGAUGGUCACAUCCUCCAGCUGUGUGGAC ...................((((((((.....))))).....(((((((.(..((..((((((((((((.......((((.....)))))))))).))))))))..).)))))))))).. ( -35.71) >DroWil_CAF1 92808 120 + 1 AAAUCCACACAAAGUUCACCCAAUUUAGCAUACAGACACAUCCAUAAUUUAUCGAAUUGCGGCAUUUUGACUGUACCGGGGAAAUCGGGUAAAAUGGCAACAUCUUGCAAUUGAGUCGAC .............(((.((.(((((.....(((((.((.((((.((((((...)))))).)).))..)).)))))((((.....))))((((.(((....))).))))))))).)).))) ( -21.50) >DroMoj_CAF1 74752 120 + 1 AAAUCCACGCACAGCUCGCCCAGCUUGGCGUACAGGCACAUCCACAGUUUGUCAAACUGUGGCAUUUUCAAAGUGCCUGGAAAGUCGGGCAGUAUGGCCACAUCCUCAAGCUGUGUGGAC .......(((((((((.((((.((((......(((((((((((((((((.....)))))))).)).......)))))))..)))).))))((.(((....))).))..)))))))))... ( -48.91) >DroPer_CAF1 157067 120 + 1 AGAUCUACGCACAGCUCUCCCAAUUUGGCAUACAGACACAUCCAGAGCUUGUCGAAUUGUGGCAUCUUCACGGUGCCCGGAAACUCUGGCAAUAUGGCCACAUCCUGCAGCUGUGUGGAC .......(((((((((.(((((((((((((..(.............)..)))))))))).((((((.....)))))).))).....((((......))))........)))))))))... ( -39.42) >consensus AAAUCCACACACAGCUCGCCCAGUUUGGCAUACAGACACAUCCACAGCUUGUCGAACUGUGGCAUUUUCACUGUGCCCGGAAAGUCGGGCAAUAUGGCCACAUCCUCCAGCUGUGUGGAC .......(((((((((.(((((((((((((...................)))))))))).(((((.......)))))..........)))...(((....))).....)))))))))... (-23.37 = -24.04 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:25 2006