Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,113,708 – 8,113,814 |
Length | 106 |
Max. P | 0.755473 |
Location | 8,113,708 – 8,113,814 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 80.36 |
Mean single sequence MFE | -30.45 |
Consensus MFE | -17.01 |
Energy contribution | -16.33 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.35 |
Mean z-score | -2.21 |
Structure conservation index | 0.56 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.755473 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8113708 106 - 22407834 UUC---GGUUCGC-------AG-GAAUCU-CAGCCUGGCCGGCUGAUGGCUCCUCCACCAUAUACUCAUUUCCAUAUCUAUCGGAAGCUGGCUCCUUCCCAGAGCCGGAAUUCAUACA ...---(((..(.-------((-((..((-(((((.....)))))).)..))))).))).......................(((..(((((((.......)))))))..)))..... ( -33.30) >DroPse_CAF1 127998 96 - 1 UUG---GUUUUUCGGGUGGAAGAGAACCUGCAGCCUGGCUGGCUGGGGAUUCCCC------------AUU--AACAUCUGUCUGAAACUUA-----UCCUAGAAUUGGAAUUCCUACA ..(---(..(((((((..((..........(((((.....)))))(((....)))------------...--....))..)))))))....-----(((.......)))...)).... ( -26.90) >DroSec_CAF1 69646 106 - 1 UUC---GAUUCGC-------AG-GAAUCU-CAGCCUGGCCGGCUGAUGGCUCCUCCACCAUAUACUCAUUUCCAUAUCUAUCGGAAGCUAGCUCCUUCCCAGAGCCGGAAUUCAUACA ...---(((((((-------((-((..((-(((((.....)))))).)..))))...............((((.........))))))..((((.......))))..)))))...... ( -27.00) >DroSim_CAF1 69744 106 - 1 UUC---GGUUCGC-------AG-GAAUCU-CAGCCUGGCCGGCUGAUGGCUCCUCCACCAUAUACUCAUUUCCAUAUCUAUCGGAAGCUAGCUCCUUCCCAGAGCCGGAAUUCAUACA (((---((((((.-------((-((..((-(((((.....)))))).)..)))).)..........................(((((.......)))))..))))))))......... ( -33.10) >DroEre_CAF1 70333 105 - 1 UUC---GGUUCGC-------AG-GAAUCU-CAGCCUGGCCGGCUGAUGGCUCCUCCACCAUAUUCUCAUCUCCAUU-CGAUCGGAAGCUUGCUCCUUCCCAGAGCCGGAAUUCAUACA (((---((((((.-------((-((..((-(((((.....)))))).)..)))).)....................-.....(((((.......)))))..))))))))......... ( -33.10) >DroYak_CAF1 71541 109 - 1 UUCACAGGUUCGC-------AG-GAAUCU-CAGCCUGGCUGGCUGAUGGCUCCUCCACCAUAUACUCAUUUCCAUACCGAUCGGAAGCUAGCUCCUUUCCAGAGCCGAAAUUCAUACA ......((((((.-------((-((..((-(((((.....)))))).)..)))).)..........................(((((........))))).)))))............ ( -29.30) >consensus UUC___GGUUCGC_______AG_GAAUCU_CAGCCUGGCCGGCUGAUGGCUCCUCCACCAUAUACUCAUUUCCAUAUCUAUCGGAAGCUAGCUCCUUCCCAGAGCCGGAAUUCAUACA ......(((((............)))))..(((((.....)))))..(((((................(((((.........)))))..............)))))............ (-17.01 = -16.33 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:23 2006