Locus 2830

Sequence ID 2L_DroMel_CAF1
Location 8,096,198 – 8,096,298
Length 100
Max. P 0.546616
window4498

overview

Window 8

Location 8,096,198 – 8,096,298
Length 100
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 86.26
Mean single sequence MFE -25.46
Consensus MFE -18.62
Energy contribution -19.42
Covariance contribution 0.80
Combinations/Pair 1.07
Mean z-score -1.60
Structure conservation index 0.73
SVM decision value 0.03
SVM RNA-class probability 0.546616
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8096198 100 - 22407834
CACCGAAGUGGGUAUCUUGAUAUCGUUCAGAUACAUUUAAACGUUUUAUGGACUACAUAAUGUUUAGAUAAUAUGAGGU-------GUGGUGUUUCGCCUCAGUUUC
(((....))).((((((.((......))))))))((((((((((..((((.....))))))))))))))....((((((-------(........)))))))..... ( -27.60)
>DroSec_CAF1 52383 107 - 1
CACAGAAGUGGGUAUCUUGAUAUCGUUCAGAUACAUUUAAACGUUUUAUGGGCCACAUAAUGUUUAGAUAAUAUGAGGUGUGUGGUGUGGUGUUUCGCUUCGGUUUC
....(((((((((((((.((......)))))))).......((..(((((.(((.((((.(((....))).)))).))).)))))..)).....)))))))...... ( -26.40)
>DroSim_CAF1 53609 107 - 1
CACAGAAGUGGGUAUCUUGAUAUCGUUCAGAUACAUUUAAACGUUUUAUGGGCCACAUAAUGUUUAGAUAAUAUGAGGUGUGUGGUGUGGUGUUUCGCUUCGGUUUC
....(((((((((((((.((......)))))))).......((..(((((.(((.((((.(((....))).)))).))).)))))..)).....)))))))...... ( -26.40)
>DroEre_CAF1 52943 97 - 1
CAUAGAAGUGGGAAUUUUGAUAUUGUUCAGAUACACUUAAACGUUUUAUGGGCUACAUAAUGUUUAGAUAAUGUGAGGUG----------UGCUUCGCUUCAAUUUC
....((((((((...(((((......)))))(((((((..(((((...(((((........)))))...))))).)))))----------)).))))))))...... ( -23.90)
>DroYak_CAF1 53612 97 - 1
CACAGAAGUGGAAACUUUGAUAUCGUUCAGAUACAUUUAAACGUUUUAUGGGCUACAUAAUGUUUAGAUAGUGUGAGGUG----------UGUUUCGUUUCAAUUUC
....(((((.(((((...(((((..((((.((..((((((((((..((((.....)))))))))))))).)).))))..)----------))))..))))).))))) ( -23.00)
>consensus
CACAGAAGUGGGUAUCUUGAUAUCGUUCAGAUACAUUUAAACGUUUUAUGGGCUACAUAAUGUUUAGAUAAUAUGAGGUG______GUGGUGUUUCGCUUCAGUUUC
....(((((((((((((.((......))))))))((((((((((..((((.....)))))))))))))).........................)))))))...... (-18.62 = -19.42 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:19 2006