Locus 283

Sequence ID	2L_DroMel_CAF1
Location	810,193 – 810,286
Length	93
Max. P	0.999979

overview

Window 0

Location	810,193 – 810,286
Length	93
Sequences	5
Columns	94
Reading direction	forward
Mean pairwise identity	94.43
Mean single sequence MFE	-28.32
Consensus MFE	-26.32
Energy contribution	-27.28
Covariance contribution	0.96
Combinations/Pair	1.04
Mean z-score	-3.42
Structure conservation index	0.93
SVM decision value	5.21
SVM RNA-class probability	0.999979
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 810193 93 + 22407834
-GAGAUAAAAGGAAAUUCCAUUGUGGCAAGUUUUCCCGAUGUGGCAAACUGCAGUGAAAGCACAACUUUCGGGGAAACUGAAAAGUGCAGUUAU
-.........((.....))(((((....(((((((((((((..(....)..))(((....))).....))))))))))).......)))))... ( -24.30)
>DroSec_CAF1 70421 92 + 1
-GAGAUAAAAGGAAAUUCCAUUGUGGCAAGUU-UCCCGAUGUGGCAAACUGCAGUGAAAGCACAACUUUCGGGGAAACUGAAAAGUGGAGUUAU
-............(((((((((......((((-((((..((..(....)..)).((((((.....))))))))))))))....))))))))).. ( -29.00)
>DroSim_CAF1 75321 92 + 1
-GAGAUAAAAGGAAAUUCCAUUGUGGCAAGUU-UCCCGAUGUGGCAAACUGCAGUGAAAGCACAACUUUCGGGGAAACUGAAAAGUGGAGUUAU
-............(((((((((......((((-((((..((..(....)..)).((((((.....))))))))))))))....))))))))).. ( -29.00)
>DroEre_CAF1 73536 93 + 1
-GAGAUAAAAGGAAAUUCCAUUGUGGCAAGUUUUCCCGAUGUGCAGAAGUGCAGUGAAAGCACAACUUUCGGGGAAACCCAAAAGUGGAGUUAU
-............(((((((((.(((...((((((((((((..(....)..))(((....))).....)))))))))))))..))))))))).. ( -31.50)
>DroYak_CAF1 74806 94 + 1
AGAGAUAAAAGGAAAUUCCAUUGUGGCAAGUUUUCCCGAUGUGGAAAAGUGCAGUGGCAGCACAACUUUCGGGGAAACCGAAAAGUGGAGUUAU
.............(((((((((.......((((((((((...((....((((.......))))..)).)))))))))).....))))))))).. ( -27.80)
>consensus
_GAGAUAAAAGGAAAUUCCAUUGUGGCAAGUUUUCCCGAUGUGGCAAACUGCAGUGAAAGCACAACUUUCGGGGAAACUGAAAAGUGGAGUUAU
.............(((((((((......((((((((((((((((....)))))(((....))).....)))))))))))....))))))))).. (-26.32 = -27.28 +   0.96)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:59 2006