Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,092,219 – 8,092,314 |
Length | 95 |
Max. P | 0.998409 |
Location | 8,092,219 – 8,092,314 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 74.05 |
Mean single sequence MFE | -17.00 |
Consensus MFE | -4.94 |
Energy contribution | -5.74 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.10 |
Mean z-score | -2.57 |
Structure conservation index | 0.29 |
SVM decision value | 2.69 |
SVM RNA-class probability | 0.996370 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8092219 95 + 22407834 CCCAAGUCUGAGAAUAUUCCAUAGGUCUUGUCACAU----ACAUAUGU----ACAUAUGU----AUGUACACUGUACC-------AUGUACUCCUCCUUAUUUCUCUUUUGUUU ..((((...(((((........(((...(((.((((----((((((..----..))))))----)))))))..((((.-------..)))).)))......))))).))))... ( -20.54) >DroSec_CAF1 48376 96 + 1 --CAAGCCUGAGAAUAUUCCAUAGGUCUUGUCACAU----AUAUGUUUGC-UACAUACAU----AUGUACACUGUACC-------AUGUACUCCUCCUUAUUUCUCUUUUGUUU --((((...(((((........(((...(((.((((----((((((....-.)))))..)----)))))))..((((.-------..)))).)))......))))).))))... ( -14.24) >DroSim_CAF1 49592 86 + 1 -----------------UCCAUAGGUCUUGUCACAU----AUAUGUGUACAUACAUACAUAUGUAUGUACACUGUACC-------AUGUACUCCUCCUUAUUUCUCUUUUGUUU -----------------.....(((....((.((((----.(((((((((((((((....)))))))))))).)))..-------))))))....)))................ ( -21.30) >DroEre_CAF1 48800 89 + 1 CCCAAGCUUGAGAAUAUUCC-UAGGUCUUGUCACAUACGUAUAUGU------------GU----AUGUACACUGUACU-------ACGUACUCCACCUUUU-UCUCUUUUGUUU ...((((..(((((......-.((((...((.((.((.(((((.((------------((----....))))))))))-------).))))...))))..)-))))....)))) ( -16.70) >DroYak_CAF1 49539 94 + 1 CCCAAGCUUGAACACAUUCCAUAGGUCUUGUCACAU----AUAUGU------------GU----AUGUACACUGUACCAUGUACCAUGUACUCCUCCUUUUGUCUCUUUUGUUU ..((((...((((((((...(((.((......)).)----))))))------------))----..(((((..((((...))))..)))))...........))...))))... ( -12.20) >consensus CCCAAGCCUGAGAAUAUUCCAUAGGUCUUGUCACAU____AUAUGU_U____ACAUA_GU____AUGUACACUGUACC_______AUGUACUCCUCCUUAUUUCUCUUUUGUUU ......................(((...(((.((((......((((((......))))))....)))))))..((((..........))))....)))................ ( -4.94 = -5.74 + 0.80)
Location | 8,092,219 – 8,092,314 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 74.05 |
Mean single sequence MFE | -21.16 |
Consensus MFE | -8.16 |
Energy contribution | -7.68 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.21 |
Mean z-score | -2.72 |
Structure conservation index | 0.39 |
SVM decision value | 3.09 |
SVM RNA-class probability | 0.998409 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8092219 95 - 22407834 AAACAAAAGAGAAAUAAGGAGGAGUACAU-------GGUACAGUGUACAU----ACAUAUGU----ACAUAUGU----AUGUGACAAGACCUAUGGAAUAUUCUCAGACUUGGG ..................(((((...(((-------(((....(((((((----((((((..----..))))))----)))).)))..))).))).....)))))......... ( -23.90) >DroSec_CAF1 48376 96 - 1 AAACAAAAGAGAAAUAAGGAGGAGUACAU-------GGUACAGUGUACAU----AUGUAUGUA-GCAAACAUAU----AUGUGACAAGACCUAUGGAAUAUUCUCAGGCUUG-- ..................(((((...(((-------(((....(((.(((----((((((((.-....))))))----))))))))..))).))).....))))).......-- ( -24.50) >DroSim_CAF1 49592 86 - 1 AAACAAAAGAGAAAUAAGGAGGAGUACAU-------GGUACAGUGUACAUACAUAUGUAUGUAUGUACACAUAU----AUGUGACAAGACCUAUGGA----------------- ................(((.....(((((-------(.....((((((((((((....))))))))))))...)----)))))......))).....----------------- ( -22.50) >DroEre_CAF1 48800 89 - 1 AAACAAAAGAGA-AAAAGGUGGAGUACGU-------AGUACAGUGUACAU----AC------------ACAUAUACGUAUGUGACAAGACCUA-GGAAUAUUCUCAAGCUUGGG ........((((-(....((.(.((((((-------(.....((((....----))------------))...))))))).).))....(...-.)....)))))......... ( -16.50) >DroYak_CAF1 49539 94 - 1 AAACAAAAGAGACAAAAGGAGGAGUACAUGGUACAUGGUACAGUGUACAU----AC------------ACAUAU----AUGUGACAAGACCUAUGGAAUGUGUUCAAGCUUGGG ........((((((.....(((.((((((.((((...)))).))))))..----.(------------(((...----.))))......)))......))).)))......... ( -18.40) >consensus AAACAAAAGAGAAAUAAGGAGGAGUACAU_______GGUACAGUGUACAU____AC_UAUGU____A_ACAUAU____AUGUGACAAGACCUAUGGAAUAUUCUCAAGCUUGGG ................(((....((((((.............)))))).....................(((((....)))))......)))...................... ( -8.16 = -7.68 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:16 2006