Locus 2827

Sequence ID 2L_DroMel_CAF1
Location 8,085,680 – 8,085,776
Length 96
Max. P 0.639176
window4493

overview

Window 3

Location 8,085,680 – 8,085,776
Length 96
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 90.00
Mean single sequence MFE -27.08
Consensus MFE -24.42
Energy contribution -24.40
Covariance contribution -0.02
Combinations/Pair 1.17
Mean z-score -1.29
Structure conservation index 0.90
SVM decision value 0.22
SVM RNA-class probability 0.639176
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8085680 96 + 22407834
CGUACGAGAGAGCAAAUAAACUGAGUCAUGGCUGACGAUGACGUUAUGCUGCUGCUCUUUUCUACUCUAUUAUAGUCCGCUGCCUAACUUGCGGCU
.(((.(((((((((..........(((((.(....).)))))..........))))))))).))).............(((((.......))))). ( -26.75)
>DroSec_CAF1 41968 96 + 1
CGUACGAGAGAGCAAAUAAACUGAGUCAUGGCUGACGAUGACGUUAUGCUGCUGCUCUUUUCUGCUCUAUUAUAGUCCGCUGCCUAACUUGCGGCU
.(((.(((((((((..........(((((.(....).)))))..........))))))))).))).............(((((.......))))). ( -26.75)
>DroSim_CAF1 42854 96 + 1
CGUACGAGAGAGCAAAUAAACUGAGUCAUGGCUGACGAUGACGUUAUGCUGCUGCUCUUUUCUGCUCUAUUAUAGUCCGCUGCCUAACUUGCGGCU
.(((.(((((((((..........(((((.(....).)))))..........))))))))).))).............(((((.......))))). ( -26.75)
>DroEre_CAF1 42125 96 + 1
CGUACGAGAGAGCAAAUAAACUGAGUCAUGGCUGACGAUGACGUUAUGCUGCUGCUCUUUUGUGCUCUAUUAUAGUCCGCUGCCUAACUUGCGGCU
.(((((((((((((..........(((((.(....).)))))..........))))))))))))).............(((((.......))))). ( -32.05)
>DroYak_CAF1 42722 96 + 1
CGUACGAGAGAGCAAAUAAACUGAGUCAUGGCUGCCGAUGACGUUAUGCUGCUGCUCUUUUCUGCUCUAUUAUAGUCCGCUGCCUAACUUGCGGCU
.(((.(((((((((..........(((((.(....).)))))..........))))))))).))).............(((((.......))))). ( -26.35)
>DroAna_CAF1 44193 77 + 1
UGUGCGAGAGAGCAAAUAAACUGAGUCAUGGCUGACGAUGACGUUAUGCUG---CUCUUUUCUUUGC----------UGCUGC------UGCGGUU
.....(((((((((.((((.....(((((.(....).))))).))))..))---)))))))....((----------(((...------.))))). ( -23.80)
>consensus
CGUACGAGAGAGCAAAUAAACUGAGUCAUGGCUGACGAUGACGUUAUGCUGCUGCUCUUUUCUGCUCUAUUAUAGUCCGCUGCCUAACUUGCGGCU
.(((.(((((((((..........(((((.(....).)))))..........))))))))).))).............(((((.......))))). (-24.42 = -24.40 +  -0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:14 2006