Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,060,427 – 8,060,533 |
Length | 106 |
Max. P | 0.787721 |
Location | 8,060,427 – 8,060,533 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 77.30 |
Mean single sequence MFE | -30.49 |
Consensus MFE | -20.20 |
Energy contribution | -21.31 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.18 |
Mean z-score | -1.45 |
Structure conservation index | 0.66 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.787721 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8060427 106 + 22407834 GUACGUAGGUGUUCCGUCAACUCUACCAGUGCAUCGUAUGAAAGCAUAGGAGGAUUAGCGUUGUAAGGAGCACCAGUCUGAAUGCA-AAAAUUAAAGAAUAUUAAUA .......((((((((..((((.(((...((.(.((.((((....)))).))).))))).))))...))))))))............-.................... ( -26.50) >DroVir_CAF1 17572 104 + 1 GUGCGCAAAUGCUCCGUCAGCUCCACCAGCGCAUCGUAGCUGAGCAGCGGCGGAUUGGCAUUAUAAGGAGCGCCGUUCUGCAGGAA--CAAUAAUAUACUAUUAAA- ((((.(.(((((((((((.(((.(..((((........)))).).)))))))))...))))).....).)))).((((.....)))--).................- ( -29.20) >DroSim_CAF1 16373 106 + 1 GUACGUAGGUGUUCCGUCAACUCUACCAGUGCAUCGUACGAAAGCAUAGGAGGAUUGGCGUUGUAAGGAGCACCAGUCUGAAUGCA-AAAAUAAUAGAAUAUUAAUA .......((((((((..((((....(((((.(.((.(((....)..)).))).))))).))))...))))))))............-.................... ( -27.40) >DroEre_CAF1 16801 107 + 1 GUACGUAGGUGUUCCGUCAGCUCCACCAGUGCAUCGUAGGAAAGCAUUGGCGGAUUGGCGUUAUAGGGAGCACCAGUCUGAUUGUAAAAAAUAAAAGACCUUUAAUA .......(((((((((((((.(((.(((((((.((....))..))))))).)))))))).......)))))))).((((.(((......)))...))))........ ( -36.01) >DroYak_CAF1 17376 101 + 1 GUGCGUAGGUGUUCCGUCAGCUCCACCAGUGCAUCGUAAGAAAGCAUUGGGGGAUUGGCGUUGUAGGGAGCACCAGUCUG------AAAAAUAAACGACCAUUAAUG .......(((((((((((((..((.(((((((.((....))..)))))))))..))))).......)))))))).(((..------..........)))........ ( -35.11) >DroAna_CAF1 18761 106 + 1 GUGCGCAGGUGCUCGGUGAGCUCAACCAGUGCGUCGUAGCUCAACAGCGGAGGAUUGGCGUUGUACGGAGCUCCCGUCUAAAGAGA-AAAAUGAUCCACAUUUAGUU (((.((....)).(((.((((((..(((((.(..(((.(.....).)))..).)))))((.....)))))))))))..........-.........)))........ ( -28.70) >consensus GUACGUAGGUGUUCCGUCAGCUCCACCAGUGCAUCGUAGGAAAGCAUAGGAGGAUUGGCGUUGUAAGGAGCACCAGUCUGAAUGCA_AAAAUAAAAGACUAUUAAUA .......(((((((((((((.(((.((.((((...........)))).)).)))))))).......))))))))................................. (-20.20 = -21.31 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:10 2006