Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,046,911 – 8,047,031 |
Length | 120 |
Max. P | 0.603340 |
Location | 8,046,911 – 8,047,031 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.72 |
Mean single sequence MFE | -37.25 |
Consensus MFE | -16.02 |
Energy contribution | -15.17 |
Covariance contribution | -0.86 |
Combinations/Pair | 1.42 |
Mean z-score | -2.00 |
Structure conservation index | 0.43 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.603340 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8046911 120 + 22407834 ACGCCUUCACAUUCGAGUAUUUGGAACCAUACUACUCUGGCAAGUGUACUCAGUACUCCAACUGUCUGCACUGCCUCACUGACGCCUCCUGUGCUUGGUGUCCUCUCACCAAUAUCUGCC ..((...((((...(((((..((....))...))))).((((.(((((..((((......))))..)))))))))..............)))).((((((......)))))).....)). ( -32.80) >DroVir_CAF1 3046 120 + 1 AUGCGUUUACGUUCGAGUAUCUGGAGCCGUAUUAUUCGGGCGAUUGUACACAGUAUAGCAACUGUCUGCACUGCCUGACAGAUGGCUCCUGUUCGUGGUGUCCGCUGACCAGCAAAUGUC ..(((..(((...((((.....((((((((.....(((((((..((((.(((((......))))).)))).)))))))...))))))))..))))..)))..)))............... ( -42.10) >DroGri_CAF1 3586 120 + 1 AUGCACUGACUUUUGAGUAUUUGGAGCCGUAUUACUCGGGGAUGUGCAGCCAGUACAGCAACUGUUUGCACUGCUUGACUGAUGCUUCCUGCUCCUGGUGCCCCUUGACCAACAAAUGUC .......(((.((((.......(((((.((((((.(((((.(.((((((.((((......)))).))))))).))))).)))))).....)))))((((........)))).)))).))) ( -37.60) >DroWil_CAF1 3944 120 + 1 AUGCUUUCACUUUUGAAUAUUUGGAACCAUAUUAUUCUGGUGAUUGUACACAAUAUUCCAAUUGUUUGUAUUGCCUAACAGAUGCCUCCUGUUCGUGGUGUCCAUUGACAGCGAAAUGUC .(((..(((((...(((((..((....))...))))).)))))..))).(((((......)))))..(((((........))))).(((((((.((((...)))).))))).))...... ( -25.90) >DroMoj_CAF1 3103 120 + 1 AUGCAUUUACCUUCGAGUACUUGGAGCCGUACUAUUCCGGCGAUUGCACUCAAUAUAACAAUUGUCUGCAUUGCCUGACCGAUGGCUCCUGCUCGUGGUGUCCACUGACCAGCAAAUGUC .(((....(((..((((((...((((((((.....((.((((((.(((..((((......))))..))))))))).))...)))))))))))))).)))(((....)))..)))...... ( -43.80) >DroAna_CAF1 5254 120 + 1 ACGCCUUUACAUUCGAGUACUUGGAACCGUACUACUCCGGGGACUGCACCAAGUACGGCAACUGCUUGCACUGCCUGACGGACGCCUCCUGUGCCUGGUGCCCCCUGACGAGCCGGUGCC .((((..........(((((........))))).((((((((...((((((.((((((((..((....)).))))....(((....))).)))).)))))).)))))..)))..)))).. ( -41.30) >consensus AUGCAUUUACAUUCGAGUAUUUGGAACCGUACUACUCCGGCGAUUGCACACAGUACAGCAACUGUCUGCACUGCCUGACAGAUGCCUCCUGUUCGUGGUGUCCACUGACCAGCAAAUGUC ..............(((((..((....))...))))).(((...((((..((((......))))..))))..))).....((((((..........)))))).................. (-16.02 = -15.17 + -0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:04 2006