Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 808,158 – 808,262 |
Length | 104 |
Max. P | 0.599612 |
Location | 808,158 – 808,262 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.60 |
Mean single sequence MFE | -26.52 |
Consensus MFE | -16.11 |
Energy contribution | -15.18 |
Covariance contribution | -0.94 |
Combinations/Pair | 1.33 |
Mean z-score | -1.68 |
Structure conservation index | 0.61 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.599612 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 808158 104 + 22407834 CG----ACAGCUUGUUAGUUCAGAAACUAUUAAAAGUCGCUUAACUCAGGCAAAUUCUGCAC------------AAUUGAUCUACAUAUGUGUGUCAAGCACACGUAGGCGACCUCCACU ..----.....(((.(((((....))))).)))..((((((........(((.....)))..------------............((((((((.....))))))))))))))....... ( -22.50) >DroSec_CAF1 68403 104 + 1 CG----GCAGCUUGUUAGUUCAGAAACUAUUAAAAGUCGCCUAACUCAGGCAAGUUCUGCAC------------AAUUGAUCUACAUAUGUGUACGAAGCACACGUAGGCGACCUCCACU .(----(.((.(((.(((((....))))).)))..((((((((......((...((((((((------------(..((.....))..)))))).))))).....))))))))))))... ( -26.40) >DroSim_CAF1 73299 104 + 1 CG----GCAGCUUGUUAGUUCAAAAACUAUUAAAAGUCGCCUAACUCAGGCAAAUUCUGCAC------------AAUUGAUCUACAUAUGUGUACGAAGCACACGUAGGCGACCUCCACU .(----(.((.(((.(((((....))))).)))..((((((((......((...((((((((------------(..((.....))..)))))).))))).....))))))))))))... ( -26.40) >DroYak_CAF1 72711 111 + 1 GCGAAUUCGC-CUGUUGGUUCAAAAACUAUAACAAGUCGUUUAACCAAGGCAUAUUCUGUACAAGCAGCUGCAGAACUGA--------UGUAUACCAGGCAUACGCAUGUGGCCUCCACU (((.((..((-(((((((((.((..(((......)))..)).)))))).((((.(((((((........)))))))...)--------)))....))))))).)))..((((...)))). ( -30.80) >consensus CG____GCAGCUUGUUAGUUCAAAAACUAUUAAAAGUCGCCUAACUCAGGCAAAUUCUGCAC____________AAUUGAUCUACAUAUGUGUACCAAGCACACGUAGGCGACCUCCACU ...............(((((....)))))......(((((((.......(((.....)))...........................((((((.......)))))))))))))....... (-16.11 = -15.18 + -0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:58 2006