Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,045,270 – 8,045,387 |
Length | 117 |
Max. P | 0.877807 |
Location | 8,045,270 – 8,045,387 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 77.66 |
Mean single sequence MFE | -36.59 |
Consensus MFE | -19.13 |
Energy contribution | -18.88 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.29 |
Mean z-score | -2.19 |
Structure conservation index | 0.52 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.877807 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8045270 117 + 22407834 AGUACAAUAAUACGGAAAGUGGUGGCAAAUGGAAGCAAAUGGCCAUUAGGUCCGCAGUGAAGCCGCCUGCUUUGGCCAGGCAUACGCUUAACACCGCUGGAUCGUAUCUCUAUAUAU .........((((((..(((((((..((.((...((...((((((.(((((..((......)).)))))...)))))).))...)).))..)))))))...)))))).......... ( -37.10) >DroPse_CAF1 47339 117 + 1 AGUACAAUAAUACGGAAAGUGGUGGCAAGUGGAAACAAAUGGCCAUCAGGUCGAAGAUAAAGCCCCCGGCGGUGGCCAGGCACACACUAAACACAGCCCGGGAUCACUUGUAUAUGU .((((((.....(((....(((((((...((....))....)))))))..)))..........(((.(((.(((...((.......))...))).))).))).....)))))).... ( -35.90) >DroGri_CAF1 1687 117 + 1 AAUACAAUAACACUGAAAGUGGCGGCAAAUGGAAACAGAUGGCCAUCAAAUCAAAACUUCAACCACCGGCGCUGGCCCGCCACACGCUGACAACGGCUGCGGAUUAUCUGUAUUUGU ((((((((((..(((...((((((((...((....))....))).......................(((....))).)))))..((((....))))..))).)))).))))))... ( -32.30) >DroYak_CAF1 2261 117 + 1 AGUACAAUAACACGGAAAGUGGUGGCAAAUGGAAGCAAAUGGCCGUCAGGUCGGCAGUGAAGCCACCUGCUUUGGCCAGGCAUACGCUUAACACCGCUGGAUCGUAUCUGUACAUUU .(((((.....((((..(((((((..((.((...((...((((((.(((((.(((......))))))))...)))))).))...)).))..)))))))...))))...))))).... ( -45.50) >DroMoj_CAF1 1348 117 + 1 AAUACAAUAAUACGGAAAGUGGCGGCAAAUGGAAGCAAAUGGCUGUCAGAUCAAAGCUACAGCCUCCGGCACUUGCAAGGCAUACUUUAACCACCGCCUUGGAUUAUUUGUAUCUGU .((((((((((.....(((((.(((....((....))...((((((.((.......)))))))).))).))))).((((((..............)))))).)))).)))))).... ( -32.84) >DroPer_CAF1 68046 117 + 1 AGUACAAUAAUACGGAAAGUGGUGGCAAGUGGAAACAAAUGGCCAUCAGGUCGAAGAUAAAGCCCCCGGCGGUGGCCAGGCACACACUAAACACAGCCCGGGAUCACUUGUAUAUGU .((((((.....(((....(((((((...((....))....)))))))..)))..........(((.(((.(((...((.......))...))).))).))).....)))))).... ( -35.90) >consensus AGUACAAUAAUACGGAAAGUGGUGGCAAAUGGAAACAAAUGGCCAUCAGGUCGAAAAUAAAGCCACCGGCGCUGGCCAGGCACACGCUAAACACCGCCGGGGAUUAUCUGUAUAUGU .(((((........((...(((((((...((....))....)))))))..)).........(((....((....))..)))...........................))))).... (-19.13 = -18.88 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:37:03 2006