Locus 2817

Sequence ID 2L_DroMel_CAF1
Location 8,043,378 – 8,043,488
Length 110
Max. P 0.602458
window4479

overview

Window 9

Location 8,043,378 – 8,043,488
Length 110
Sequences 4
Columns 110
Reading direction forward
Mean pairwise identity 94.09
Mean single sequence MFE -32.55
Consensus MFE -27.83
Energy contribution -28.82
Covariance contribution 1.00
Combinations/Pair 1.09
Mean z-score -1.59
Structure conservation index 0.85
SVM decision value 0.14
SVM RNA-class probability 0.602458
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 8043378 110 + 22407834
GGCAUUGCCAUCGAGGGCGAAACAUAUGUUUUGUUUUGCUCGCGACUUGCAGCGAUAGGCGGCGACAAGCAACGUCGUUAUCGAAGACCGAUAGGGCCCGAUACAAAAAA
(((.((((..(((.((((((((((.......)))))))))).)))...))))((((((.(((((........)))))))))))....((....)))))............ ( -37.30)
>DroSec_CAF1 2121 110 + 1
GGCAUUGCCAUCGAAGACGAAACAUAUGUUUUGUUUUGCUCGCGACUUGCAGCGAUAGGCGGCGACAAACAACGUCGUUAUCGAAGACCGAUAGGGCCCGAUACAAAAAA
(((..(((((((.((((((((((....))))))))))(((.((.....)))))))).))))(((((.......)))))(((((.....)))))..)))............ ( -33.60)
>DroSim_CAF1 2154 110 + 1
GGCAUUGCCAUCCAACACGAAACAUAUGUUUUGUUUUGCUCGCGACUUGCAGCGAUAGGCGGCGACAAACAACGUCGUUAUCGAAGACCGAUAGGGCCCGAUACAAAAAA
(((..((((...(((.(((((((....))))))).))).((((........))))..))))(((((.......)))))(((((.....)))))..)))............ ( -30.90)
>DroEre_CAF1 2203 110 + 1
GGCAUUGCCAUCGAAGACAAAACAUAUGUUUUGUUCUGCUUCAGACUUGCAGCGAUAGGCGGCGACAAACAACGACGAUAUCGAAGACCGAUAGGGCCCGAUACAACAAA
(((.(((((((((..((((((((....))))))))((((.........)))))))).)))))................(((((.....)))))..)))............ ( -28.40)
>consensus
GGCAUUGCCAUCGAAGACGAAACAUAUGUUUUGUUUUGCUCGCGACUUGCAGCGAUAGGCGGCGACAAACAACGUCGUUAUCGAAGACCGAUAGGGCCCGAUACAAAAAA
(((..(((((((.((((((((((....))))))))))(((.((.....)))))))).))))(((((.......)))))(((((.....)))))..)))............ (-27.83 = -28.82 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:59 2006