| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 8,011,633 – 8,011,727 |
| Length | 94 |
| Max. P | 0.608709 |
| Location | 8,011,633 – 8,011,727 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 79.62 |
| Mean single sequence MFE | -24.01 |
| Consensus MFE | -14.04 |
| Energy contribution | -14.46 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.608709 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8011633 94 + 22407834 -AAUCAA---CAAAGU-AAGGCUUAUCAU-CGCCAAGGCGAACCGGUUUGCCCAA-UAGAUA----------AAGUCAGAAUACGCCAGCAUUUGAAAAAUAACUGGGUGU -......---......-..((((((((.(-(((....))))...((....))...-..))).----------)))))...((((.((((...((....))...)))))))) ( -21.90) >DroSec_CAF1 7467 94 + 1 -AAUCAA---CAAAGU-AAGGCUUAUCAU-CGCCAAGGCGAACCGGUUUGCCCAA-UAGAUA----------AAGCCAGAAUACGCCCGCACUUGAAAAAUAACUGGGUGU -......---......-..((((((((.(-(((....))))...((....))...-..))).----------))))).....(((((((...((....))....))))))) ( -24.90) >DroSim_CAF1 7348 94 + 1 -AAUCAA---CAAAGU-AAGGCUUAUCAU-UGCCACGGCGAACCGGUUUGCCCAA-UAGAUA----------AAGCCAGAAUACGCCCGCACUUGAAAAAUAACUGGGUGU -......---......-..((((((((((-((....((((((....)))))))))-).))).----------))))).....(((((((...((....))....))))))) ( -25.50) >DroEre_CAF1 7852 93 + 1 -AAUCAA---CCAAGU-GCGGCUUAUCAU-CGCCA-GGCGAACCGGUUUGCCCAA-CAGAUA----------AAGCCACCAAACGCCCGCAUUCGACAAAUAACUGGGUGU -......---......-..(((((...((-(....-((((((....))))))...-..))).----------))))).....(((((((...............))))))) ( -22.66) >DroYak_CAF1 9375 94 + 1 -AAUCAA---CCAAGU-ACGGCUUAUCAU-CGCCA-GGCGAACCGGUUUGCCCAAGCAGAUA----------AAGCCACAAAACGCCCGCACUUGAAAAAUAACUGGGUGU -......---......-..((((((((..-.((..-((((((....))))))...)).))).----------))))).....(((((((...((....))....))))))) ( -25.30) >DroPer_CAF1 7729 108 + 1 AAAUCCACACCAAAGCAAAGGCUUAUCAAUUGACG-GGCGAACCGGUUUGCC-AA-UAUAUUUAUCUACUCGGAGCUUGACUACGCCCUCCCUCGGUCAAAGUUUCGGAAU ...(((......((((....)))).....(((((.-((((((....))))))-..-...............((((..((....))..))))....)))))......))).. ( -23.80) >consensus _AAUCAA___CAAAGU_AAGGCUUAUCAU_CGCCA_GGCGAACCGGUUUGCCCAA_UAGAUA__________AAGCCAGAAUACGCCCGCACUUGAAAAAUAACUGGGUGU ...................(((((..(....)....((((((....))))))....................))))).....(((((((...............))))))) (-14.04 = -14.46 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:52 2006