Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 8,009,969 – 8,010,085 |
Length | 116 |
Max. P | 0.644346 |
Location | 8,009,969 – 8,010,085 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 81.49 |
Mean single sequence MFE | -30.73 |
Consensus MFE | -18.61 |
Energy contribution | -19.81 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.27 |
Mean z-score | -1.98 |
Structure conservation index | 0.61 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.644346 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 8009969 116 + 22407834 AAAACCCCUUAUCAUAGUUAUAGAAUCAGCUGAACGAUAAGCCCAAUGUUUGUCGACCAAUUCGGCAUGAUUUGAUGUGAUAUAAGCCACUUUGCAAGAGGUACUCAAACUAAAGG ...(((.(((((((((......((((((((((((((((((((.....)))))))).....)))))).))))))..))))))....((......))))).))).............. ( -28.40) >DroSec_CAF1 5584 116 + 1 AAAUCCCCUUAUCAUAGUCAUAGAAUCAGCUGAUCGAUAAGCCCAAUGUCUGUCGACCAAUUCGGCAUGAUUCGAUGUGAGAUAAGCAACUUUGCAGGAGGUGCUUAAACUAAAGG ......((((.(((((......(((((((((((((((((..(.....)..)))))).....))))).))))))..)))))..((((((.(((.....))).)))))).....)))) ( -32.40) >DroSim_CAF1 5548 116 + 1 AAAUCCCCUUAUCAAAGUCAUAGAAUCAGCUGAUCGAUAAGCCCAAUGUUUGUCGACCAAAUCGGCAUGAUUCGAUGUGAGAUAAGCAACUUUGCAGGAGGUACUUACACUAAAGG ....(((((((((....(((((((((((((((((((((((((.....))))))))).....))))).))))))..))))))))))(((....))).)).))............... ( -31.60) >DroEre_CAF1 6106 116 + 1 AAAUCCCCUUAUCAAACUCAAAGAAUCAGCUGAUCGAUAAGCCCAGUGUCUGUCGACCAAGUCGGCAUGAUUCGGGGUCAGAUAAGCAACUUUGCAAGUGUCACUUAAGCUAAAGA .......((((((..((((...(((((((((((((((((..(.....)..)))))).....))))).)))))).))))..))))))...(((((((((.....)))..)).)))). ( -32.90) >DroYak_CAF1 7500 115 + 1 AAAACCACUUAUCAAAGUCAUAGAAUCAGCUGAGCGAUAAGCCCAGUGCUUGUCGACCAACUCGGCAUGUUUGGGAGUGAGAUAAGCAACUUUGCAAGAGGUAUUUACACUAAAU- ...(((..(((((..(.((...((((..((((((((((((((.....)))))))).....))))))..))))..)).)..)))))(((....)))....))).............- ( -30.00) >DroAna_CAF1 5617 116 + 1 UAGUCCUCUUAUCAAAGUCAAAGAAUCGGCGGAGCGAUAAGCCCAGUGCUGAUCUAUCAAGUCGGCAUGUUCUUCGCCAAGAUAAUCAACUUUAUGAGAUGGGUUUACACUAAGAG .(..((((((((.(((((......((((((((.((.....)))).((((((((.......)))))))).......)))..))).....))))))))))).))..)........... ( -29.10) >consensus AAAUCCCCUUAUCAAAGUCAUAGAAUCAGCUGAUCGAUAAGCCCAAUGUUUGUCGACCAAGUCGGCAUGAUUCGAUGUGAGAUAAGCAACUUUGCAAGAGGUACUUAAACUAAAGG .......((((((.........((((((((((((((((((((.....)))))))).....)))))).)))))).......)))))).............................. (-18.61 = -19.81 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:51 2006