Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 807,960 – 808,054 |
Length | 94 |
Max. P | 0.861759 |
Location | 807,960 – 808,054 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 80.83 |
Mean single sequence MFE | -30.69 |
Consensus MFE | -23.31 |
Energy contribution | -23.15 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.30 |
Mean z-score | -1.86 |
Structure conservation index | 0.76 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.861759 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 807960 94 + 22407834 ---------GUGUUAAUCCGCAA--------AAUCGGUAGGACUACGGCUGCCAUAUCCAGAUAUGUGCAGAUAC----AUAUACACAGCCUUGUAUAUGGCGGCAGCUGUGGUU ---------........(((...--------...)))...(((((((((((((........(((((((....)))----)))).....(((........)))))))))))))))) ( -34.30) >DroSec_CAF1 68205 94 + 1 ---------GUGUUAAUCCGCAA--------AAUCGGUAGGACUACGGCUGCCAUAUCCAGAUAUGUGCAGAUAC----AUAUACUCAGCCUUGUAUAUGGCGGUAGCUGUGGAU ---------.......(((((..--------.....)).)))(((((((((((.......((((((((......)----))))).)).(((........)))))))))))))).. ( -30.90) >DroSim_CAF1 73101 94 + 1 ---------GUGUUAAUCCGCAA--------AAUCGGUAGGACUACGGCUGCCAUAUCCAGAUAUGUGCAGAUAC----AUAUACACAGCCUUGUAUAUGGCGGUAGCUGUGGUU ---------........(((...--------...)))...(((((((((((((........(((((((....)))----)))).....(((........)))))))))))))))) ( -32.30) >DroEre_CAF1 71278 115 + 1 GCGUGUGCAGUGUUAAUCCGCAAAAUCGCAAAAUCGGUAGGACUGCGGCUGCCAAAUCCAGAUAUGUGCAGAUAUACAGAUACAUACGGCCUUAUAUAUGGCCAUAGCUGUGGUU (((..(((.(.......).)))....)))...........(((..((((((...........(((((((.........).)))))).((((........)))).))))))..))) ( -30.00) >DroYak_CAF1 72491 99 + 1 GCGUGUGCAGUGUUAAUCCGCAA--------AAUCGGUAGAACUGCGGCUGCCAUAUCCAGAUACGUACA--------GAUAUAUACGGCCGAGUAUAUGGCUAUAGCUGUGGUU (((..(.........)..)))..--------.........(((..((((((((((((.......((((..--------......)))).......)))))))...)))))..))) ( -25.94) >consensus _________GUGUUAAUCCGCAA________AAUCGGUAGGACUACGGCUGCCAUAUCCAGAUAUGUGCAGAUAC____AUAUACACAGCCUUGUAUAUGGCGGUAGCUGUGGUU .........(((......)))...................(((((((((((((...........((((................))))(((........)))))))))))))))) (-23.31 = -23.15 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:57 2006