Locus 2808

Sequence ID 2L_DroMel_CAF1
Location 7,993,437 – 7,993,527
Length 90
Max. P 0.862469
window4461

overview

Window 1

Location 7,993,437 – 7,993,527
Length 90
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 81.12
Mean single sequence MFE -18.35
Consensus MFE -12.52
Energy contribution -12.49
Covariance contribution -0.03
Combinations/Pair 1.14
Mean z-score -2.22
Structure conservation index 0.68
SVM decision value 0.83
SVM RNA-class probability 0.862469
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7993437 90 - 22407834
AAGAGCAAAUAAGGCAAGCAUGAUGAGCAAACACAUA-GAAAACAUUGUCAACAGGUUGCGGAAGUGACGCUCAAGGUUCAAGGAUAAACC
..((((......(((((.....(((........))).-.......))))).....((..(....)..))))))..((((........)))) ( -19.92)
>DroPse_CAF1 6047 77 - 1
AAGAGCAAAGAGUACAAU--------------AAAUAGGAAUAUAUUGUCAACAGGUUGCGGAAGUGACGGGUAGAGUUCAAGGAUAUUGC
..((((.....(.(((((--------------(.((....)).))))))).((..((..(....)..))..))...))))........... ( -15.50)
>DroSec_CAF1 5815 90 - 1
AAGAGCAAAUAAGGCAAGCAUGAUGAGCAAACACAUA-GAAAACAUUGUCAACAGGUUACGGAAGUGACGCUCAAAGUUCAAGGAUAAACC
..((((......(((((.....(((........))).-.......))))).....(((((....))))))))).................. ( -19.32)
>DroSim_CAF1 4077 90 - 1
AAGAGCAAAUAAGGCAAGCAUGAUGAGCAAACACAUA-GAAAACAUUGUCAACAGGUUGCGGAAGUGACGCUCAAGGUUCAAGGAUAAACC
..((((......(((((.....(((........))).-.......))))).....((..(....)..))))))..((((........)))) ( -19.92)
>DroEre_CAF1 4159 90 - 1
AAGAGCAAAUAAGGCAAGCAUGAUGAGCAAACACAUA-GAAAACAUUGUCAACAGGUUGCGGAAGUGACGCUCAAGGUUCAAGGAUAAACC
..((((......(((((.....(((........))).-.......))))).....((..(....)..))))))..((((........)))) ( -19.92)
>DroPer_CAF1 6014 77 - 1
AAGAGCAAAGAGUACAAU--------------AAAUAGGAAUAUAUUGUCAACAGGUUGCGGAAGUGACGGGUAGAGUUCAAGGAUAUUGC
..((((.....(.(((((--------------(.((....)).))))))).((..((..(....)..))..))...))))........... ( -15.50)
>consensus
AAGAGCAAAUAAGGCAAGCAUGAUGAGCAAACACAUA_GAAAACAUUGUCAACAGGUUGCGGAAGUGACGCUCAAAGUUCAAGGAUAAACC
..((((......(((((............................))))).....(((((....))))).......))))........... (-12.52 = -12.49 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:42 2006