Locus 2806

Sequence ID 2L_DroMel_CAF1
Location 7,989,361 – 7,989,481
Length 120
Max. P 0.820474
window4459

overview

Window 9

Location 7,989,361 – 7,989,481
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.67
Mean single sequence MFE -36.11
Consensus MFE -19.86
Energy contribution -19.70
Covariance contribution -0.16
Combinations/Pair 1.42
Mean z-score -2.09
Structure conservation index 0.55
SVM decision value 0.68
SVM RNA-class probability 0.820474
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7989361 120 + 22407834
CGAUGUCCACCUUAUCGGGUUUCUCUCGAAACCGAUAGGGUCCCAGUUGCUCAAAGUGUGGCUUCUUGUUCGAUCCCACAUAGAAGUCAUCUGGAUUGGUCCAGUUAAAUAGAUAUAUAU
..(((((.((((((((((.((((....)))))))))))))).((((.((((....((((((..((......))..))))))...)).)).)))).................))))).... ( -36.20)
>DroVir_CAF1 120 120 + 1
CGAUGUCUACCUUAUCCGGUUUCUCCCGAAACCGAUAAGGUCCCAGUUGUACAAAAUGCGGCUUCUUUGGGGAGCCCUCGUAUAAGUCCUCCGGAUUAGUCCAGUUGAAUAGAUAAACAU
...(((((((((((((.((((((....)))))))))))))...((..((.((...((((((((((.....))))))...)))).(((((...))))).)).))..))..))))))..... ( -37.10)
>DroGri_CAF1 120 120 + 1
CAAUGUCCACCUUGUCGGGUUUUUCACGAAAUCGAUAGGGUCCCAAUUGUACAAAGUGCGGCUUUCUUGGGGAGCCCUGGUAAAGGUCCUCCGGAUUUGUCCAAUUGAAUAGAUAUACAU
..(((((.(((((((((..(((.....)))..)))))))))..((((((.(((((....((((((.....))))))((((..........)))).))))).))))))....))))).... ( -35.40)
>DroWil_CAF1 120 120 + 1
UGAUAUCGACCUUAUCGGGUUUUUCUCUAAAACGAUAUGGUCCCAGUUGUUCGAAGCGUGGCUUUUGUCCAGAGCCAAUAUAAAAAUACUCUGGAUUAGUCCAAUUGAAUAUAUAGACAU
.......((((.(((((..((.......))..))))).)))).....(((((((....(((((...((((((((..............)))))))).)).))).)))))))......... ( -31.54)
>DroMoj_CAF1 120 120 + 1
CGAUGUCGACCUUGUCGGGUUUCUCUCGAAACCGAUAGGGCCCCAGUUGCACAAAGUGCGGUUUCCUCUUUGAGCCCUCGUACAAAUCCUCGGGAUUUGUCCAAUUGAAUAAAUAAACAU
..((((...(((((((((.((((....)))))))))))))...((((((.((...((((((....(((...)))...))))))((((((...)))))))).)))))).........)))) ( -33.40)
>DroAna_CAF1 120 120 + 1
CGAUGUCGACUUUGUCGGGACUCUCCCGGAACCGGUAGGGUCCCAGUUGUUCAAAUCGCGGCUUCUUGCCCGAUCCCACAUAAAAGUCCUCCGGAUUCGUCCAAUUAAAGAGAUAGACAU
..(((((((((((...((((((((.(((....))).))))))))...(((....((((.(((.....)))))))...)))..))))))....(((....))).............))))) ( -43.00)
>consensus
CGAUGUCGACCUUAUCGGGUUUCUCUCGAAACCGAUAGGGUCCCAGUUGUACAAAGUGCGGCUUCUUUCCCGAGCCCACAUAAAAGUCCUCCGGAUUAGUCCAAUUGAAUAGAUAAACAU
((((....((((((((.((((((....))))))))))))))....))))..........(((((.......)))))................(((....))).................. (-19.86 = -19.70 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:40 2006