| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,958,686 – 7,958,776 |
| Length | 90 |
| Max. P | 0.806291 |
| Location | 7,958,686 – 7,958,776 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 71.36 |
| Mean single sequence MFE | -8.79 |
| Consensus MFE | -7.03 |
| Energy contribution | -6.89 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.14 |
| Mean z-score | -0.66 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.806291 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7958686 90 - 22407834 ---AAUAGAACAUUACACUAAAUCACCUGUAU---AAUUCUUACCUCUUCUAC-UU--UAUUCUC-AUUGCAGGUACGUACAAACAUAUAUGCAAUAUAC- ---...((((...((((..........)))).---..))))............-..--.......-((((((.(((.((....)).))).))))))....- ( -8.90) >DroSec_CAF1 130003 79 - 1 ---AAUAGAACAUUACACUAAAUCACCUGUAU---AAUUCUUGCCUCUUCUUC-UU--UAUUCUC-AUUGCAGGUACGUACAAACAUAC------------ ---.....................(((((((.---..................-..--.......-..)))))))..............------------ ( -7.11) >DroEre_CAF1 131882 87 - 1 ---AAUACAACAUUACUCUAAAUCACCUGUAU---AAUUCUCGCCUCUUCUU------UAUUCUC-GUUGCAGGUACGUACAAACACAUGCAU-AUACACU ---.....................(((((((.---.................------.......-..)))))))..................-....... ( -7.23) >DroYak_CAF1 135251 89 - 1 ---AAUAGAACAUUACACUAAAUCACCUGUAU---AAUUCUCGCCUCUUCUUC-UC--CAUUCUC-AUUACAGGUACGUACAAGCACAUUUGU-AUAUAC- ---.....................(((((((.---..................-..--.......-..)))))))..(((((((....)))))-))....- ( -10.61) >DroAna_CAF1 128145 71 - 1 ---UGCGGAACAUUACACUAAAUCACCUGUAU---AAUUCUCGC-UCUUCUUU-----CUUUCUCGAUUGCAGGUAUGUACUG------------------ ---..(((.((((...........(((((((.---.........-........-----..........))))))))))).)))------------------ ( -8.69) >DroPer_CAF1 161218 89 - 1 AGCGGCAGAACAUUAUACUAAAUCACCUGUAUACUAAUUCUCGUUUCUCCUCUCGUUCCCCUCUCGAUUGCAGGUAUGUACAA-----UGGAU-A------ ..........((((.(((......(((((((.((........))........(((.........))).)))))))..))).))-----))...-.------ ( -10.20) >consensus ___AAUAGAACAUUACACUAAAUCACCUGUAU___AAUUCUCGCCUCUUCUUC_UU__CAUUCUC_AUUGCAGGUACGUACAAACA_AU___U_A______ ........................(((((((.....................................))))))).......................... ( -7.03 = -6.89 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:39 2006