Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,956,725 – 7,956,824 |
Length | 99 |
Max. P | 0.635723 |
Location | 7,956,725 – 7,956,824 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 78.39 |
Mean single sequence MFE | -23.82 |
Consensus MFE | -9.70 |
Energy contribution | -10.38 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.07 |
Mean z-score | -1.99 |
Structure conservation index | 0.41 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.635723 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7956725 99 + 22407834 UCCGGCUCCAGCG------------UCGAGUCGGACUCGAGUCUCAAGCCCAGACCCAAACACCACGGCAGAGCCCCUGCUCGUUCCAAUGCCCACUCCCAUAUCCAUAUC ((((((((.....------------..))))))))...((((.....(((................))).((((....))))............))))............. ( -22.19) >DroSec_CAF1 128083 101 + 1 UCCGGCUCCGGCUC----------UCCGAGUCGGACUCGAGUCUCAAGCCCAGACCCAAACACCACAGCAGAGCCCCUGCUCGUUCCAAUGCCCACUCCCAUAUCCAUAUC ...(((((((((((----------...))))))))...(.((((.......)))).).......(((((((.....))))).))......))).................. ( -23.60) >DroSim_CAF1 128122 101 + 1 UCCGGCUCCGGCUC----------UCCGAGUCGGACUCGAGUCUCAAGCCCAGACCCAAACACCACGGCAGAGCCCCUGCUCGUUCCAAUGCCCACUCCCAUAUCCAUAUC ...(((((((((((----------...))))))))...(.((((.......)))).).......(((((((.....)))).)))......))).................. ( -25.10) >DroEre_CAF1 129918 82 + 1 UCCGG------------------CUCCGAGUCGGACUCGAGUCUCAAGCCCAGACCCAACCAC-----------CACGGCAAUACCCAAUACCCACUCCCAUAUCCAUAUC ...((------------------(((.(((.....))))))))....(((.............-----------...)))............................... ( -11.89) >DroYak_CAF1 133202 99 + 1 UCCGGCUCUGGCUCUGGCUCUGGCUCCGAGUCGUACUCGAGUCUCAAGCCCAGACCCAG-AGC-----------CUCUGCUCGUUCCAAUACCCACUCCCAUAUCCAUAUC ...((((((((.(((((((..(((((.(((.....))))))))...)).))))).))))-)))-----------).................................... ( -36.30) >consensus UCCGGCUCCGGCUC__________UCCGAGUCGGACUCGAGUCUCAAGCCCAGACCCAAACACCAC_GCAGAGCCCCUGCUCGUUCCAAUGCCCACUCCCAUAUCCAUAUC ...((..(.(((..............((((.....)))).((((.......)))).......................))).)..))........................ ( -9.70 = -10.38 + 0.68)
Location | 7,956,725 – 7,956,824 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 78.39 |
Mean single sequence MFE | -35.30 |
Consensus MFE | -22.20 |
Energy contribution | -23.48 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.26 |
Mean z-score | -1.67 |
Structure conservation index | 0.63 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.626896 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7956725 99 - 22407834 GAUAUGGAUAUGGGAGUGGGCAUUGGAACGAGCAGGGGCUCUGCCGUGGUGUUUGGGUCUGGGCUUGAGACUCGAGUCCGACUCGA------------CGCUGGAGCCGGA ..................(((......(((.((((.....)))))))((((((.(((((.(((((((.....))))))))))))))------------))))...)))... ( -36.40) >DroSec_CAF1 128083 101 - 1 GAUAUGGAUAUGGGAGUGGGCAUUGGAACGAGCAGGGGCUCUGCUGUGGUGUUUGGGUCUGGGCUUGAGACUCGAGUCCGACUCGGA----------GAGCCGGAGCCGGA ............((..(.(((......((.(((((.....)))))))..(.((((((((.(((((((.....)))))))))))))))----------.)))).)..))... ( -36.30) >DroSim_CAF1 128122 101 - 1 GAUAUGGAUAUGGGAGUGGGCAUUGGAACGAGCAGGGGCUCUGCCGUGGUGUUUGGGUCUGGGCUUGAGACUCGAGUCCGACUCGGA----------GAGCCGGAGCCGGA ............((..(.(((......(((.((((.....)))))))..(.((((((((.(((((((.....)))))))))))))))----------.)))).)..))... ( -37.80) >DroEre_CAF1 129918 82 - 1 GAUAUGGAUAUGGGAGUGGGUAUUGGGUAUUGCCGUG-----------GUGGUUGGGUCUGGGCUUGAGACUCGAGUCCGACUCGGAG------------------CCGGA .........((((.((((.........)))).))))(-----------((..(((((((.(((((((.....)))))))))))))).)------------------))... ( -27.30) >DroYak_CAF1 133202 99 - 1 GAUAUGGAUAUGGGAGUGGGUAUUGGAACGAGCAGAG-----------GCU-CUGGGUCUGGGCUUGAGACUCGAGUACGACUCGGAGCCAGAGCCAGAGCCAGAGCCGGA ...............((..((......))..))...(-----------(((-((((.(((((.(((..(..(((((.....)))))..)..)))))))).))))))))... ( -38.70) >consensus GAUAUGGAUAUGGGAGUGGGCAUUGGAACGAGCAGGGGCUCUGC_GUGGUGUUUGGGUCUGGGCUUGAGACUCGAGUCCGACUCGGA__________GAGCCGGAGCCGGA ..................(((.((((.....((.(.(((...))).).))..(((((((.(((((((.....))))))))))))))..............)))).)))... (-22.20 = -23.48 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:33 2006