Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,954,025 – 7,954,128 |
Length | 103 |
Max. P | 0.959545 |
Location | 7,954,025 – 7,954,128 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 77.67 |
Mean single sequence MFE | -36.92 |
Consensus MFE | -25.11 |
Energy contribution | -25.91 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.12 |
Mean z-score | -2.08 |
Structure conservation index | 0.68 |
SVM decision value | 1.50 |
SVM RNA-class probability | 0.959545 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7954025 103 - 22407834 AUCCGGCGUGAUCAGCUCGUGGGCAGAUGUGAGCUG----UCAGCA-AGCGAUCCGAUCACUUGGGAACCCAACGAGAAGGGGUUUGGGCGGUGAUUGGUUUGUGAGA .....((.(((.((((((..(......)..))))))----))))).-.((((.(((((((((...((((((.........))))))....))))))))).)))).... ( -37.10) >DroSec_CAF1 125481 96 - 1 AUCCGGCGUGAUCAGCUCGUGGGCAGUUGUGAGCUGUCUGUCAGCA-AGCGAUCCGAUCAC----------AGCUAGAAGGGGUUUGGCAGGUGAUUGGA-UGGGAGA .(((((((.((.(((((((..(....)..)))))))))))))....-....((((((((((----------.((((((.....))))))..)))))))))-).))).. ( -40.00) >DroSim_CAF1 125532 97 - 1 AUCCGGCGUGAUCAGCUCGUGGGCAGAUGUGAGCUGUCUGUCAGCA-AGCGAUCCGAUCAC----------AGCGAGAAGGGGUUUGGCAGGUGAUUGGGUUGCGAGA ....((((.((.((((((..(......)..))))))))))))....-.(((((((((((((----------.((.(((.....))).))..))))))))))))).... ( -38.90) >DroEre_CAF1 127187 99 - 1 AUGCGGCGUGAUCAGCUCGUGGGCAGAUGUGAGUUG----UCAGCAAAGCGAUCCGAUCACAGGGGGAUCCAC-G---AGGGGGGUGG-GGGUGAUAGGGUGGCGAGA .....((.(((.((((((..(......)..))))))----)))))...((.((((.(((((.......(((((-.---......))))-).))))).)))).)).... ( -32.40) >DroYak_CAF1 130397 94 - 1 AUCCGGCGUGAUCAGCUCGUGGGCAGAUGUGAGCUG----UCAGCAAAGCGAUCCGAUCACUUG-GGACCCAC-G---GAAGA----G-GGGUGUUUGGGUUGCAAGA .....((.(((.((((((..(......)..))))))----)))))...(((((((((.(((...-...(((.(-.---...).----)-))))).))))))))).... ( -36.20) >consensus AUCCGGCGUGAUCAGCUCGUGGGCAGAUGUGAGCUG____UCAGCA_AGCGAUCCGAUCAC__G_G_A_CCACCGAGAAGGGGUUUGG_AGGUGAUUGGGUUGCGAGA .....((.(((.((((((..(......)..))))))....)))))...(((((((((((((..............................))))))))))))).... (-25.11 = -25.91 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:31 2006