Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 807,767 – 807,859 |
Length | 92 |
Max. P | 0.763745 |
Location | 807,767 – 807,859 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 83.97 |
Mean single sequence MFE | -27.00 |
Consensus MFE | -22.83 |
Energy contribution | -22.17 |
Covariance contribution | -0.66 |
Combinations/Pair | 1.09 |
Mean z-score | -1.74 |
Structure conservation index | 0.85 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.763745 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 807767 92 - 22407834 UCAUCUUCCAUGGAAUGCGAUUCGCAAACCUUUUGUUUGCCUAAGCUCUCGGUGGGAGAGGGGGGGGGGUUGAUUUCCUUUUCGGGAAUGGG ...((((((((.((..((.....((((((.....))))))....))..)).))))))))(..((((..(....)..))))..)......... ( -32.90) >DroSec_CAF1 68026 78 - 1 CCAUCUUCCAUGGAAUGCGAUUCACAAACCUUUUGUUUGCCUAAGCUCUCGGUGGGAG--------------CUCUCCUUUUUGGGGAAGGG ((..(((((((.((..((......(((((.....))))).....))..)).)))))))--------------.(((((.....))))).)). ( -25.30) >DroSim_CAF1 72922 78 - 1 UCAUCUUCCAUGGAAUGCGAUUCACAAACCUUUUGUUUGCCUAAGCUCUCGGUGGGAG--------------CUCUCCUUUUCGGGGAAGGG ....(((((((.((..((......(((((.....))))).....))..)).)))))))--------------.(((((.....))))).... ( -22.80) >consensus UCAUCUUCCAUGGAAUGCGAUUCACAAACCUUUUGUUUGCCUAAGCUCUCGGUGGGAG______________CUCUCCUUUUCGGGGAAGGG ((..(((((((.((..((......(((((.....))))).....))..)).)))))))...............(((((.....))))).)). (-22.83 = -22.17 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:56 2006