Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 107,941 – 108,031 |
Length | 90 |
Max. P | 0.999164 |
Location | 107,941 – 108,031 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 94.91 |
Mean single sequence MFE | -19.47 |
Consensus MFE | -19.42 |
Energy contribution | -18.94 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.14 |
Mean z-score | -1.87 |
Structure conservation index | 1.00 |
SVM decision value | 3.41 |
SVM RNA-class probability | 0.999164 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 107941 90 - 22407834 UAUUAUUUUGAGACUUAUUUGGGCGCUCUUUAGGGAAACUUUCCUAGCGUUCUCGGUACUCUCAAAUGAUUUUACUUCUUCAGUAUCU-CC .(((((((.((((.......(((((((....(((....)))....))))))).......)))))))))))..((((.....))))...-.. ( -20.74) >DroSec_CAF1 2457 90 - 1 UUUUAUUUUGGGACUUAUUUGGGCGCUCUUUGGGGAAACUUUCCUAGCGUUCUCGGUACUCUCAAAUGAUUUUACUUCUUCAGUAUCU-CC ......(((((((.......(((((((....(((....)))....))))))).......)))))))......((((.....))))...-.. ( -19.54) >DroSim_CAF1 2458 90 - 1 UUUUAUUUUGGGACUUAUUUGGGCGCUCUUUGGGGAAACUUUCCUAGCGUUCUCGGUACUCUCAAAUGAUUUUACUUCUUCAGUAUCU-CC ......(((((((.......(((((((....(((....)))....))))))).......)))))))......((((.....))))...-.. ( -19.54) >DroEre_CAF1 2467 90 - 1 UUUUAUUUUGGGACUUAUUUGGGCGCUCUUUGGGGAAACUUUCCUAGCGUUCUCGGCGCUCUCAAAUAAUAUUACUUCUU-AGUAUCUUCC ......(((((((.......(((((((....(((....)))....))))))).......)))))))......((((....-))))...... ( -20.24) >DroYak_CAF1 2430 89 - 1 UUUUAUUUUGGGGCUUAUUUGGGCGCUCUUUGGGGA-ACUUUCCUAGCGUUCUCGGUACUCUCAAAUAAUUUUACUUCUUCAGUAUCU-CC ..((((((.((((..(....(((((((.....((((-....)))))))))))...)..)))).))))))...((((.....))))...-.. ( -17.30) >consensus UUUUAUUUUGGGACUUAUUUGGGCGCUCUUUGGGGAAACUUUCCUAGCGUUCUCGGUACUCUCAAAUGAUUUUACUUCUUCAGUAUCU_CC ......(((((((.......(((((((....(((....)))....))))))).......)))))))......((((.....))))...... (-19.42 = -18.94 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:39 2006