Locus 2798

Sequence ID 2L_DroMel_CAF1
Location 7,940,952 – 7,941,045
Length 93
Max. P 0.500000
window4444

overview

Window 4

Location 7,940,952 – 7,941,045
Length 93
Sequences 3
Columns 93
Reading direction reverse
Mean pairwise identity 91.34
Mean single sequence MFE -11.60
Consensus MFE -10.48
Energy contribution -10.92
Covariance contribution 0.45
Combinations/Pair 1.05
Mean z-score -1.53
Structure conservation index 0.90
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7940952 93 - 22407834
UUACAUAGGCGGCGCCUUAUCUUUCUCUGUCGCACACACACACACACACAGCGCUCUUACUGCCCCGCCUUUCCUUUUUCCACUUUAUAUGUA
.(((((((((((.((..((.....(.((((.................)))).)....))..)).))))))..................))))) ( -13.29)
>DroSim_CAF1 112789 91 - 1
UUACAUAGGCGGCGCCUUAUCUUUCUCUGUCACACACAC--ACACACACAGCGCUCUUACUGCCCCGCCUUUCCUUUUUCCACUUUAUAUGUA
.(((((((((((.((..((.....(.((((.........--......)))).)....))..)).))))))..................))))) ( -13.42)
>DroYak_CAF1 117111 85 - 1
UUACAUGGGCGACGCCUUAUCUUUCUCUGUCACACACA--------CACAACGCUCUUACUGCCCCGCCUUUCCUUUUUCCACUUUAUAUGUA
.(((((((((((((.............)))).......--------......((.......))...))))..................))))) (  -8.08)
>consensus
UUACAUAGGCGGCGCCUUAUCUUUCUCUGUCACACACAC__ACACACACAGCGCUCUUACUGCCCCGCCUUUCCUUUUUCCACUUUAUAUGUA
.(((((((((((.((..((.....(.((((.................)))).)....))..)).))))))..................))))) (-10.48 = -10.92 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:26 2006