Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,935,214 – 7,935,304 |
Length | 90 |
Max. P | 0.774220 |
Location | 7,935,214 – 7,935,304 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 79.48 |
Mean single sequence MFE | -17.74 |
Consensus MFE | -11.71 |
Energy contribution | -11.79 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.07 |
Mean z-score | -1.64 |
Structure conservation index | 0.66 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.774220 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7935214 90 + 22407834 CGCUGC---UAUUCUCCAUUUCUCACACAUUCUCUGUUGGUCGCCGCCAGCACUUUGUGCACCACUUUGGCUAACCACACACACAUUCACCUA----------------- ......---......(((.......((((.....(((((((....)))))))...))))........))).......................----------------- ( -12.46) >DroPse_CAF1 126718 110 + 1 UGUAUUUAGGAUUCUCCAUUUCUCACACAUUCUCUGCUGGUCGCCGGCAGCACUUUGUGCACCACUUUGGUGAACCACACACGCCCACAUACCAGUGCCAGUGCCAGUAC ........((.....)).................((((((.(((.((((((((...)))).......(((....)))..................)))).))))))))). ( -27.90) >DroSec_CAF1 107130 90 + 1 CGCUGC---UAUUCUCCAUUUCUCACACAUUCUCUGUUGGUCGCCGCCAGCACUUUGUGCACCACUUUGGCUAACCACACACACAUUCACCUA----------------- ......---......(((.......((((.....(((((((....)))))))...))))........))).......................----------------- ( -12.46) >DroSim_CAF1 107119 88 + 1 --CUGC---UAUUCUCCAUUUCUCACACAUUCUCUGUUGGUCGCCGCCAGCACUUUGUGCACCACUUUGGCUAACCACACACACAUUCACCUA----------------- --....---......(((.......((((.....(((((((....)))))))...))))........))).......................----------------- ( -12.46) >DroEre_CAF1 108637 90 + 1 CGCUGC---UAUUCUCCAUUUCUCACACAUUCUCUGCUGGUCGCCGCCAGCACUUUGUGCACCACUUUGGCUAACCACACACACAUUCACCUA----------------- ......---......(((.......((((.....(((((((....)))))))...))))........))).......................----------------- ( -14.86) >DroPer_CAF1 125747 110 + 1 UGUAUUUAGGAUUCUCCAUUUCUCACACAUUCUCUGCUGGUCGCCGGCAGCACUUUGUGCACCACUUUGGUGAACCACACACGCCCACAUACCAGUGCCAGUACCAGUAC ........((.....)).................(((((((.((.((((((((...)))).......(((....)))..................)))).))))))))). ( -26.30) >consensus CGCUGC___UAUUCUCCAUUUCUCACACAUUCUCUGCUGGUCGCCGCCAGCACUUUGUGCACCACUUUGGCUAACCACACACACAUUCACCUA_________________ ...............(((.......((((.....(((((((....)))))))...))))........)))........................................ (-11.71 = -11.79 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:26 2006