| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,928,340 – 7,928,433 |
| Length | 93 |
| Max. P | 0.742241 |
| Location | 7,928,340 – 7,928,433 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 86.53 |
| Mean single sequence MFE | -20.64 |
| Consensus MFE | -15.97 |
| Energy contribution | -16.16 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.742241 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7928340 93 + 22407834 GAGAGGAAGCUGGAAAAAAA-GAUGAUGAAGAGGCUACGGAAAA-------AACAAAACGAAGCCGCAUGGUGGAAAAAGUUUUCCUCGCUUCUCUUUUUU ((((((((((.((((((...-.((.(((....((((.((.....-------.......)).)))).))).))........))))))..))))).))))).. ( -24.60) >DroSec_CAF1 100368 91 + 1 G--AGGAAGCUGGAAAAAAAGGAUGAUGAAGAGGCUACGGAUAA-------AACAAAACGAAGCCGCAUGGUGGAAAAAGUUUUCUUCGCUUCUCUGUUC- .--(((((((.((((((.....((.(((....((((.((.....-------.......)).)))).))).))........))))))..))))).))....- ( -20.82) >DroSim_CAF1 100320 92 + 1 G--AGGAAGCUGGAAAAAAUGGAUGAUGAAGAGGCUACGGAAAA-------AACAAAACGAAGCCGCAUGGUGGAAAAAGUUUUCUUCGCUUCUCUUUUUU (--(((((((.((((((.....((.(((....((((.((.....-------.......)).)))).))).))........))))))..))))).))).... ( -21.12) >DroEre_CAF1 101463 95 + 1 G--AGGAAGCUGCAAAAAAUAGAUGAUGAAGAGGCUACAGAAAAAAGAAAAAACAAAACGAAGUCGCAUGGUGGAA-AAGUUUUCUACGCUUU-CUU--UU (--(((((((...............(((....((((.(.....................).)))).))).((((((-.....)))))))))))-)))--.. ( -16.00) >consensus G__AGGAAGCUGGAAAAAAAGGAUGAUGAAGAGGCUACGGAAAA_______AACAAAACGAAGCCGCAUGGUGGAAAAAGUUUUCUUCGCUUCUCUUUUUU ....((((((.((((((.....((.(((....((((.((...................)).)))).))).))........))))))..))))))....... (-15.97 = -16.16 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:20 2006