Locus 2793

Sequence ID 2L_DroMel_CAF1
Location 7,923,985 – 7,924,082
Length 97
Max. P 0.782841
window4436

overview

Window 6

Location 7,923,985 – 7,924,082
Length 97
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 81.10
Mean single sequence MFE -32.07
Consensus MFE -27.04
Energy contribution -27.77
Covariance contribution 0.72
Combinations/Pair 1.05
Mean z-score -1.56
Structure conservation index 0.84
SVM decision value 0.56
SVM RNA-class probability 0.782841
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7923985 97 - 22407834
CCCCCCC-----CCCCCC-------CCUCAGCGACAUGGA--AAGAGCGCCACGCGCCGCCGCCAGCUCUUCUGGGCGCCAAGGCGGCAUUCAAAUUUGAGCUACCUCUC-----C
.......-----......-------.(((((((...(((.--.......))))))((((((....((((....)))).....)))))).........)))).........-----. ( -28.80)
>DroSec_CAF1 96069 104 - 1
CAUCCCC-----CCCUCCCUCCAACGCUCAGCGACAAGGA--AAGAGCGCCACGCGCCGCCGCCAGCUCUUCUGGGCGCCAAGGCGGCAUUCAAAUUUGAGCUACCUCUC-----C
.......-----.............((((((((....((.--.......)).)))((((((....((((....)))).....)))))).........)))))........-----. ( -31.30)
>DroSim_CAF1 95996 109 - 1
CAUUCCCCUCCCCCCCUCCUCCACCGCUCAGCAAGAAGGA--AAGAGCGCCACGCGCCGCCGCCAGCUCUUCUGGGCGCCAAGGCGGCAUUCAAAUUUGAGCUACCUCUC-----C
.........................((((((...(((...--..(.((((...)))))((((((.((((....)))).....)))))).)))....))))))........-----. ( -31.20)
>DroEre_CAF1 97050 96 - 1
CUGCCCC-----CCUCC--------GCUCAGCGACAAGAA--AAGAGCGCCACGCGCCGCCGCCAGCUCUUCUGGGCGCCAAGGCGGCAUUCAAAUUUGAGCUACCUCUC-----C
.......-----.....--------((((((.........--..(.((((...)))))((((((.((((....)))).....))))))........))))))........-----. ( -30.90)
>DroYak_CAF1 99184 104 - 1
CUUCCCC-----CCUUCCCCUCAUAGCUCAUAGACAAGCA--AAGAGCGCCACGCGCCGCCGCCAGCUCUUCUGGGCGCCAAGGCGGCAUUCAAAUUUGAGCUACCUCUC-----C
.......-----...........(((((((..........--..(.((((...)))))((((((.((((....)))).....)))))).........)))))))......-----. ( -32.60)
>DroAna_CAF1 95315 93 - 1
CGG-----------------------CAGAACGAGGUGGAUAGAGAGCGCCACGCGCCGCCGCCAGCUCUUCUGGGCGCCAAGGCGGCAUUCAAAUUUGAGCUACCUCUCUCUAGC
..(-----------------------((((..(((((((...(((.((((...)))).((((((.((((....)))).....)))))).......)))...)))))))..))).)) ( -37.60)
>consensus
CAUCCCC_____CCCCCC_______GCUCAGCGACAAGGA__AAGAGCGCCACGCGCCGCCGCCAGCUCUUCUGGGCGCCAAGGCGGCAUUCAAAUUUGAGCUACCUCUC_____C
.........................((((((.............(.((((...)))))((((((.((((....)))).....))))))........)))))).............. (-27.04 = -27.77 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:19 2006