Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,922,264 – 7,922,358 |
Length | 94 |
Max. P | 0.824109 |
Location | 7,922,264 – 7,922,358 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 82.82 |
Mean single sequence MFE | -38.61 |
Consensus MFE | -26.41 |
Energy contribution | -27.22 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.25 |
Mean z-score | -2.72 |
Structure conservation index | 0.68 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.824109 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7922264 94 - 22407834 AGAAGCGCUUGGCUGAACCGGAGGUAAGGUAACAA---------GUUAACUUGCCUCUGCUGCGCAUUUGGGCCCAGUUAAGCC-------GAGCGUUUUGGUUGAGCGC .(((((((((((((.(((((((((((((.(((...---------.))).))))))))))..((.(....).))...))).))))-------))))))))).......... ( -40.60) >DroSec_CAF1 94294 94 - 1 AGAAGCGCUUGGCUGAACCGGAGGUGAGGAAACAA---------GUAGACUUACCUCUGCUGCGCAUUUGGGCCCAGUUAAGCC-------GAGCGUUUUGGUUGAGCGC .(((((((((((((.(((((((((((((.......---------.....))))))))))..((.(....).))...))).))))-------))))))))).......... ( -39.40) >DroSim_CAF1 94264 94 - 1 AGAAGCGCUUGGCUGAACCGGAGGUGAGGAAACAA---------GUAAACUUGCCUCUGCUGCGCAUUUGGGCCCAGUUAAGCC-------GAGCGUUUUGGUUGAGCGC .(((((((((((((.(((((((((..((.......---------.....))..))))))..((.(....).))...))).))))-------))))))))).......... ( -38.80) >DroEre_CAF1 95264 94 - 1 AGAAGCGCUUGGCUGAACCGAAGGUGAGGAAACAA---------GUAAACUUGCCUCUGCUGCGCAUUUGAGCCCAGCUAAGCC-------GAGCGUUUUGGUUGAGCGC ....(((((..((..((.((..(((((((...(((---------(....)))))))).((((.((......)).))))...)))-------...)).))..))..))))) ( -39.20) >DroYak_CAF1 97455 94 - 1 AGAAGCGCUUGGCUGAACCGAAGGUGAGGAAACAA---------GUAAACUUGCCUCUGCUGCGCAUUUGAGUCCAACUAAGCC-------GAGCGUUUUGGUUGAGCGC ....(((((..((..((.((..(((((((...(((---------(....))))))))(((...)))...............)))-------...)).))..))..))))) ( -31.40) >DroAna_CAF1 93827 102 - 1 AGAAGCGCUUGGCUGAGCCACA--------AACAACAGUCAGCCGAAAGCUACCUCCAGGUGCGCUUUAGAGCCGAGCUAAGCCGGAGCCGGAGCGUCUUGGUUGGGCGC ....((((((((((((......--------........))))))))......((.(((((.((((((..(..(((.((...)))))..)..)))))))))))..)))))) ( -42.24) >consensus AGAAGCGCUUGGCUGAACCGGAGGUGAGGAAACAA_________GUAAACUUGCCUCUGCUGCGCAUUUGAGCCCAGCUAAGCC_______GAGCGUUUUGGUUGAGCGC ....(((((..((..((.((.(((((((.....................)))))))..((((.((......)).))))................)).))..))..))))) (-26.41 = -27.22 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:18 2006