Locus 2791

Sequence ID 2L_DroMel_CAF1
Location 7,918,105 – 7,918,206
Length 101
Max. P 0.950225
window4434

overview

Window 4

Location 7,918,105 – 7,918,206
Length 101
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 71.97
Mean single sequence MFE -21.86
Consensus MFE -11.65
Energy contribution -11.43
Covariance contribution -0.22
Combinations/Pair 1.22
Mean z-score -1.97
Structure conservation index 0.53
SVM decision value 1.40
SVM RNA-class probability 0.950225
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7918105 101 - 22407834
AACUAAUUACAAGUGAUUGACUGAUGAUUGAAGUC--AGAUGAUAGAUUGU-------AGAAUUUAGAUUUCUAU---UCUAAGUAUGC-AAAUGCCA-UGCCGAUUGCUUGUGA
......(((((((..((((.(((((.......)))--))(((.((..((((-------(..(((((((.......---))))))).)))-)).)).))-)..))))..))))))) ( -27.50)
>DroPse_CAF1 101404 103 - 1
UGCCAAUUACGAGUGAUUGG---------CAAGUCGCAAAUGAUGGCUUG--AUAAGUAGUUUCCAGAUCUCCAUAGUACUAAGUAUUCGAAAUGCCAAUGCCAAUU-CUUGUGA
......(((((((.((((((---------((.((((....))))((((((--(((..((((.................))))..)).))))...)))..))))))))-))))))) ( -24.63)
>DroSec_CAF1 90141 78 - 1
AACUAAUUACAAGUGAUUGA---------AAAGUC-----------------------AGAAUUUCGAUUUCUAU---UUUAAGUAUGC-AAAUGCCA-UGCCGAUUGCUUGUGA
......(((((((..((((.---------(((((.-----------------------((((.......))))))---)))..((((((-....).))-)))))))..))))))) ( -19.80)
>DroSim_CAF1 90055 77 - 1
AACUAAUUACAAGUGAUUCA----------GUGUC-----------------------AGAAUUUCGAUUUCUAU---UUUAAGUAUGC-AAAUGCCA-UGCCGAUUGCUUGUGA
......(((((((..(((..----------.....-----------------------((((.......))))..---.....((((((-....).))-))).)))..))))))) ( -15.60)
>DroEre_CAF1 91021 97 - 1
AACUAAUUACAAGUGAUUGA---------CAAGUC--AGAUGACAGAUUACGAUUA--CGAUUUACGAUUUCUAG---UUUAAGUAUGC-AAAUGCCC-UGCCGAUUGCUUGUGA
......(((((((..((((.---------((.(((--....)))((((((.((...--((.....))...)))))---)))..((((..-..))))..-)).))))..))))))) ( -20.60)
>DroYak_CAF1 93144 92 - 1
AACUAAUUACAAGUGAUUGA---------CAAGUC--AGAUGAUAGAUUGU-------AGAUUUACGAUUUCUAG---UUUAGGUAUGC-AAAUAUCA-UGCCGAUUGCUUGUGA
......(((((((..(((..---------......--((((...(((((((-------(....))))))))...)---))).((((((.-......))-)))))))..))))))) ( -23.00)
>consensus
AACUAAUUACAAGUGAUUGA_________CAAGUC__AGAUGAUAGAUUG________AGAAUUUCGAUUUCUAU___UUUAAGUAUGC_AAAUGCCA_UGCCGAUUGCUUGUGA
......(((((((((((((...............................................(....)...........((((.....))))......))))))))))))) (-11.65 = -11.43 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:17 2006