Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 806,846 – 806,939 |
Length | 93 |
Max. P | 0.724725 |
Location | 806,846 – 806,939 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 96.57 |
Mean single sequence MFE | -30.22 |
Consensus MFE | -27.56 |
Energy contribution | -28.56 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.28 |
Structure conservation index | 0.91 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.724725 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 806846 93 - 22407834 GUUCGUGUCCAGGAGAAAUCGCAUAACUCUUCGCUGCCCAAAUCCCAUCCACACGUGCUAAGGCACACCUGUGCGGAUGGAU-GGCGGAUGGAU ......((((((((((...........))))).(((((...((((.((((.(((((((....))))....))).))))))))-))))).))))) ( -32.70) >DroSec_CAF1 67126 93 - 1 GUUCGUGUCCAGGAGAAAUCGCAUAACUCUUCGCUGCCCAAAUCCCAUCCACACGUGCUAAGGCACACCUGUGCGGAUGGAU-GGCGGAUGGAU ......((((((((((...........))))).(((((...((((.((((.(((((((....))))....))).))))))))-))))).))))) ( -32.70) >DroSim_CAF1 72006 93 - 1 GUUCGUGUCCAGGAGAAAUCGCAUAACUCUUCGCUGCCCAAAUCCCAUCCACACGUGCUAAGGCACACCUGUGCGGAUGGAU-GGCGGAUGGAU ......((((((((((...........))))).(((((...((((.((((.(((((((....))))....))).))))))))-))))).))))) ( -32.70) >DroEre_CAF1 70139 94 - 1 GUUCGUGUCCAGCAGAAAUCGCAUAACUCUUCGCUGCCCAAAUCCCAUCCACACGUGCUAAGGCACACCUGCGCGCAUGGAUAGGCGGAUGGAU (((((((..((((.(((............)))))))..))...((.(((((..(((((..(((....))))))))..))))).))))))).... ( -26.20) >DroYak_CAF1 71314 89 - 1 GUUCGUGUCCAGGAGAAAUCGCAUAACUCUUCGCUGCCCAAAUCCCAUCCACACGUGCUAAGGCACACCUGUGCGGAUG-----GCGGAUGGAU ......((((((((((...........)))))..........((((((((.(((((((....))))....))).)))))-----).)).))))) ( -26.80) >consensus GUUCGUGUCCAGGAGAAAUCGCAUAACUCUUCGCUGCCCAAAUCCCAUCCACACGUGCUAAGGCACACCUGUGCGGAUGGAU_GGCGGAUGGAU ......((((((((((...........))))).(((((......((((((.(((((((....))))....))).))))))...))))).))))) (-27.56 = -28.56 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:55 2006