Locus 2789

Sequence ID 2L_DroMel_CAF1
Location 7,915,284 – 7,915,381
Length 97
Max. P 0.727298
window4432

overview

Window 2

Location 7,915,284 – 7,915,381
Length 97
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 77.06
Mean single sequence MFE -36.40
Consensus MFE -11.80
Energy contribution -13.42
Covariance contribution 1.62
Combinations/Pair 1.20
Mean z-score -3.65
Structure conservation index 0.32
SVM decision value 0.41
SVM RNA-class probability 0.727298
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7915284 97 - 22407834
CCACUUGGUUGGCGCUGUGGGGAGGGGGGAGGGGA--GGGGUGAUCCCCUUUCUUCUUUCCCUCCUAUUCUGCGGCGCCUUGCAAGUUAUUUUUAUUGA
..(((((...(((((((..(((((((((((((..(--((((....)))))..)))).))))))))....)..)))))))...)))))............ ( -53.90)
>DroSec_CAF1 87360 87 - 1
CCACUUGAAUGGCGCUGGGGGU---------UGGA--AGGGGGAUCCCCUUUCUUCUUUCCC-CCUAUUUCGCGGCGCUUUGCAAGUUAUUUUUAUUGA
..(((((...(((((((((((.---------.(((--(((((....)))))))).....)))-))........))))))...)))))............ ( -36.70)
>DroEre_CAF1 88236 89 - 1
CGACUUGGAUGAAGGUGGGGGU---------GGGGGGAUCCCGAUCCCCUUUCUUCUCGUCC-CCCAAUCUGCGGCGCUUUGCAAGUUAUUUUUAUUGA
.((((((((.(((((.((((((---------.(((....))).))))))..)))))))((.(-(.(.....).)).))....))))))........... ( -31.20)
>DroYak_CAF1 90313 81 - 1
CCACUUGGAUGGAGUUAGGGGG---------GGG--------GAUCCCCUUUCUUCUUUCCC-CCCAUUCAGCGGCGCUUUGCAAGUUAUUUUUAUUGA
..((((((..((((..(((..(---------(((--------....))))..)))..)))).-.)).....((((....))))))))............ ( -23.80)
>consensus
CCACUUGGAUGGAGCUGGGGGG_________GGGA__AGGG_GAUCCCCUUUCUUCUUUCCC_CCCAUUCUGCGGCGCUUUGCAAGUUAUUUUUAUUGA
..(((((...(((((((((((..........((((.........))))..........))))..........)))))))...)))))............ (-11.80 = -13.42 +   1.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:16 2006