Locus 2786

Sequence ID 2L_DroMel_CAF1
Location 7,893,473 – 7,893,573
Length 100
Max. P 0.874215
window4427

overview

Window 7

Location 7,893,473 – 7,893,573
Length 100
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 91.85
Mean single sequence MFE -18.40
Consensus MFE -16.44
Energy contribution -16.88
Covariance contribution 0.44
Combinations/Pair 1.04
Mean z-score -1.42
Structure conservation index 0.89
SVM decision value 0.88
SVM RNA-class probability 0.874215
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7893473 100 + 22407834
UUUAAAAGUGAGAUCAAUUCAAGCUGUUUAAAGGCGUUUUAAAAUGUUUCUUAAAAUUUUUGAAUAGAUUUUGCAUAAGGGUAAAAAGUUUUCCAAAGAA
.......(..(((((.(((((((...((((((((((((....))))))).)))))...))))))).)))))..)....(((..........)))...... ( -20.20)
>DroSec_CAF1 66072 99 + 1
UUUAAAAGUGAGAUCAAUUCAAGCUGUUUAAAAGCGUUUUGAAAUGUUUCUUAAAAUU-UUGAAAAGAUUUUGCAUAAGGGUAAAAUGUUUUCCAAUGAA
...((((.(((((.((.((((((.((((....)))).)))))).))..)))))...))-))(((((.(((((((......))))))).)))))....... ( -20.40)
>DroSim_CAF1 67333 99 + 1
UUUAAAAGUGAGAUCAAUUCAAGCUGUUUAAAAGCGUUUUGAAAUGUUUCUUAAAAUU-UUGAAUAGAUUUUGCAUAAGGGUAAAACGUUUUCCAAAGAA
.......(..(((((.(((((((...((((((((((((....))))))).)))))..)-)))))).)))))..)....(((..........)))...... ( -20.30)
>DroEre_CAF1 66288 99 + 1
UUUAAAAGUGAGAUCAAUUCAAGCUGUUUAAAAGCGUUUUAAAAUGUUUCUUAAAAUU-UUGAAUAGUUUUAGCAUUAAGGGAAAAUGGUUUGCAAAGAA
.......((.(((((((((((((...((((((((((((....))))))).)))))..)-)))))).((....))............))))))))...... ( -13.30)
>DroYak_CAF1 67676 98 + 1
UUUAAAAGUGAGAUCAAUUCAAGCUGUUUAAAAGCGUUUUAAAAUGUUUCCUAAAAUU-UUGAAUAGAUUUUGCAUUAAAGGA-AAUGUGUUGCAAAGAA
.......(..(((((.(((((((...((((.(((((((....)))))))..))))..)-)))))).)))))..).........-................ ( -17.80)
>consensus
UUUAAAAGUGAGAUCAAUUCAAGCUGUUUAAAAGCGUUUUAAAAUGUUUCUUAAAAUU_UUGAAUAGAUUUUGCAUAAGGGUAAAAUGUUUUCCAAAGAA
.......(..(((((.((((((....((((((((((((....))))))).)))))....)))))).)))))..).......................... (-16.44 = -16.88 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:11 2006