Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,888,298 – 7,888,418 |
Length | 120 |
Max. P | 0.994771 |
Location | 7,888,298 – 7,888,418 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.75 |
Mean single sequence MFE | -37.81 |
Consensus MFE | -31.68 |
Energy contribution | -33.12 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.12 |
Mean z-score | -2.36 |
Structure conservation index | 0.84 |
SVM decision value | 2.51 |
SVM RNA-class probability | 0.994771 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7888298 120 + 22407834 UAACUUUCGAUUGUGGCUUCUGCCUGAGUUAGGGACCCAUUGUCCUUGGGCAGAACGAUUACCAUUGAAAGGUUUGAGUAUGCAAAUGGAAGCUCAAUAAUUUGGUCUAUGGUCGAAGUA ..((((.((((..(((.((((((((.....((((((.....)))))))))))))).....((((.........((((((.(.(....).).)))))).....)))))))..)))))))). ( -37.24) >DroSec_CAF1 60928 120 + 1 UAACUUUCGAUUGUGUCUUCUGCUUGAUUUAAGGACCCAUUGUCCUUGGGCAGAACGAUUACCAUUGAAAGGUUUGAGUAUGCAAAAGGCAGCUCAAUAAUUUGGUCUAUGGGCGAAGUA ...((((((((.((((((((((((.....(((((((.....)))))))))))))).)).))).))))))))..((((((.(((.....)))))))))..((((.(((....))).)))). ( -40.40) >DroSim_CAF1 61823 120 + 1 UAACUUUCGAUUGUGUCUUCUGCCUGAUUUAGGGACCCAUUGUCCUUGGGCAGAACGAUUACCAUUGAAAGGUUUGAGUACGCAAAAGGCAGCUCAAUAAUUUGGUCUAUGGGCGAAGUA ...((((((((.(((((((((((((.....((((((.....)))))))))))))).)).))).))))))))..((((((..((.....)).))))))..((((.(((....))).)))). ( -40.50) >DroEre_CAF1 61013 120 + 1 UAACUUUCGAGUGUGGCUUCUGCCUGAUUUAGCGACACAAUGUCCUUGGGCAGAACGAUUACCAUUGAAAGGUUUGAGUAUGCGAAAGGCAGCUCAAUAAUUUGGUCAAAGGAAGAAGUA ...(((((((..(((((((((((((.....((.(((.....))))).)))))))).).))))..)))))))..((((((.(((.....)))))))))..((((..((....))..)))). ( -33.00) >DroYak_CAF1 62335 120 + 1 UAACUUUCGAUUGUGGCUUCUGCCCGAGUGAGCGACCCAUUGUCCUUGGGCAGAACGAUUACCAUUGAGAGGUUUGAGUAAGCGAAGGGCAGCUCAAUAAUUUGGUCAAAGGGAGAAGUA ...((((((((.((((((((((((((((.((.(((....)))))))))))))))).).)))).))))))))..((((((..((.....)).))))))....................... ( -37.90) >consensus UAACUUUCGAUUGUGGCUUCUGCCUGAUUUAGGGACCCAUUGUCCUUGGGCAGAACGAUUACCAUUGAAAGGUUUGAGUAUGCAAAAGGCAGCUCAAUAAUUUGGUCUAUGGGCGAAGUA ...((((((((.(((((((((((((.....((((((.....)))))))))))))).).)))).))))))))..((((((.(((.....)))))))))..((((.(((....))).)))). (-31.68 = -33.12 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:08 2006