Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,880,360 – 7,880,460 |
Length | 100 |
Max. P | 0.581942 |
Location | 7,880,360 – 7,880,460 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 84.47 |
Mean single sequence MFE | -29.11 |
Consensus MFE | -22.14 |
Energy contribution | -23.20 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.19 |
Mean z-score | -1.86 |
Structure conservation index | 0.76 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.581942 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7880360 100 - 22407834 AUCCAGGCAUUGACCUAGGUCACUAAUGCC-AGCUAAACGGGGUUCUCAUUAACAUCAACCUAAUCCCACUUUGAGGGAUGCC---GUCGGCACCUGUCGAAGA .....(((((((((....))))...)))))-........((((((.................)))))).((((((.((.((((---...)))).)).)))))). ( -31.13) >DroPse_CAF1 56222 98 - 1 AUCCAGACAUUGACCUAGGUCACAAAUUCAGAUCUUACAAGCAUUCUUAUUAGUG------GGAUGCCUCAUGGAGAGAUCCUCCAACCAUCACCGAACGAGGC ..........((((....)))).........(((((((..............)))------))))(((((.(((((.....)))))..(......)...))))) ( -21.24) >DroSec_CAF1 53055 100 - 1 AUCCAGGCAUUGACCUAGGUCACUAACGCC-AGCUAAACGGGGUUCUCAUUAACAUCAACCUAAUCCCACUUUGAGGGAUGCC---GUCGGCACCUGUCGAAGA .....(((..((((....)))).....)))-........((((((.................)))))).((((((.((.((((---...)))).)).)))))). ( -27.73) >DroSim_CAF1 53973 100 - 1 AUCCAGGCAUUGACCUAGGUCACUAACGCC-AGCUAAACGGGGUUCUCAUUAACAUCAACCUAAUCCCACUUUGAGGGAUGCC---GUCGGCACCUGUCGAAGA .....(((..((((....)))).....)))-........((((((.................)))))).((((((.((.((((---...)))).)).)))))). ( -27.73) >DroEre_CAF1 53076 100 - 1 AUCCAGGCAUUGACCUAGGUCACUAAUGCC-AGCUAAACGGGGUUCUCAUUAACAUCAACCUAAUCCCACUUCGAGGGAUGCC---GUCGGCACCUGUCGAAGA .....(((((((((....))))...)))))-........((((((.................)))))).((((((.((.((((---...)))).)).)))))). ( -33.23) >DroYak_CAF1 54376 100 - 1 AUCCAGGCAUUGACCUAGGUCACUAAUGCC-AGCUAAACGGGGUUCUCAUCAACAUGAACCUAAUCCCACUUUGAGGGAUGCC---GUCGGCACCUGUCGAAGA .....(((((((((....))))...)))))-........((((((.((((....))))....)))))).((((((.((.((((---...)))).)).)))))). ( -33.60) >consensus AUCCAGGCAUUGACCUAGGUCACUAAUGCC_AGCUAAACGGGGUUCUCAUUAACAUCAACCUAAUCCCACUUUGAGGGAUGCC___GUCGGCACCUGUCGAAGA .....(((((((((....))))...))))).........((((((.................)))))).((((((.((.((((......)))).)).)))))). (-22.14 = -23.20 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:06 2006