Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,875,405 – 7,875,555 |
Length | 150 |
Max. P | 0.925820 |
Location | 7,875,405 – 7,875,499 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 82.32 |
Mean single sequence MFE | -20.53 |
Consensus MFE | -14.15 |
Energy contribution | -14.65 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.15 |
Structure conservation index | 0.69 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.762506 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7875405 94 - 22407834 UAUGACUUACUUGAGUCAUUUUCACACCCCGGCCAUAAUUUGUUAUGGUCGCCAU------UCCAAUCUG---AGGCUCAGUAC--CCCGCC--GAAACUCAAUUGC .(((((((....)))))))..........(((((((((....)))))))))....------..((((.((---((..((.((..--...)).--))..)))))))). ( -24.40) >DroSec_CAF1 47233 83 - 1 UAUGACUUACUUGAGUCAUUUUCACACCCCGGCCAUAAUUUGUUAUGGUCGCCAU------UCCAAUCUG---AGGCUCAGUA---------------CUCAAUUGC .(((((((....)))))))..........(((((((((....)))))))))....------..((((.((---((........---------------)))))))). ( -22.00) >DroSim_CAF1 49000 83 - 1 UAUGACUUACUUGAGUCAUUUUCACACCCCGGCCAUAAUUUCUUAUGGUCGCCAU------UCCAAUUUG---AGGCUCGGUA---------------CUCAAUUGC .(((((((....)))))))..........(((((((((....)))))))))....------..(((((.(---((........---------------)))))))). ( -21.70) >DroEre_CAF1 48135 96 - 1 UAUGACUUACUUGACUCAUUUUCACACCCCUGCCAUAAUUUGUUAUGGUCGCCAU------UCCAAUCCG---AGGCUCAGUAAUUCCCGCC--GAAACUCAAUUGU ...((.(((((.((.................(((((((....))))))).(((..------.........---.)))))))))).)).....--............. ( -13.20) >DroYak_CAF1 49358 104 - 1 UAUGACUUACUUGAGUCAUUUUCACACCCCGGCCAUAAUUUGUUAUGGUCGCCAUUUCAAUUCCAAUCUG---AGGCUCAGUACCCCCCGUCCGGCAACUCAAUUGC .(((((((....)))))))..........(((((((((....)))))))))............((((.((---((.....(.((.....)).).....)))))))). ( -21.30) >DroAna_CAF1 49357 98 - 1 UAUGACUUACUCGAGUCAUUUUCACACCCCGGCCAUAAUUUGUUAUGGUCUCCGA------AUCAAUCUCGGUAAUCUCAGUAC--CCCGCC-GAAAACCCAAUUGC ..((((((....))))))(((((.......((((((((....)))))))).((((------.......))))............--......-)))))......... ( -20.60) >consensus UAUGACUUACUUGAGUCAUUUUCACACCCCGGCCAUAAUUUGUUAUGGUCGCCAU______UCCAAUCUG___AGGCUCAGUAC__CCCGCC__GAAACUCAAUUGC .(((((((....)))))))..........(((((((((....)))))))))........................................................ (-14.15 = -14.65 + 0.50)
Location | 7,875,465 – 7,875,555 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 89.55 |
Mean single sequence MFE | -16.78 |
Consensus MFE | -11.82 |
Energy contribution | -12.22 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -3.07 |
Structure conservation index | 0.70 |
SVM decision value | 1.17 |
SVM RNA-class probability | 0.925820 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7875465 90 - 22407834 CACGGCUACACCCUUCAU------AUCU-UCUUAUUUUCGAAUAUAAAACGAACUUUUAUGUUUAUGACUUACUUGAGUCAUUUUCACACCCCGGCC ...((((...........------....-..........((((((((((.....))))))))))(((((((....)))))))...........)))) ( -15.70) >DroSec_CAF1 47282 90 - 1 CACGGCAACACCCUUCUU------AUCU-UCUUAUUUUCGAAUAUAAAACGAACUUUUAUGUUUAUGACUUACUUGAGUCAUUUUCACACCCCGGCC ...(((............------....-..........((((((((((.....))))))))))(((((((....)))))))............))) ( -14.80) >DroSim_CAF1 49049 90 - 1 CACGGCAACACCCUUCUU------AUCU-UCUUAUUUUCGAAUAUAAAACGAACUUUUAUGUUUAUGACUUACUUGAGUCAUUUUCACACCCCGGCC ...(((............------....-..........((((((((((.....))))))))))(((((((....)))))))............))) ( -14.80) >DroYak_CAF1 49428 90 - 1 CACGCCAACACCCUUCUU------AUCU-UCUUAUUUUCGAAUAUAAAACGAACUUUUAUGUUUAUGACUUACUUGAGUCAUUUUCACACCCCGGCC ...(((............------....-..........((((((((((.....))))))))))(((((((....)))))))...........))). ( -15.90) >DroAna_CAF1 49421 92 - 1 UACAGC-----CCUCCAUUCGGCCAUCGGUGCGUUUUUCGAAUAUAAAACGAACUUUUAUGUUUAUGACUUACUCGAGUCAUUUUCACACCCCGGCC ......-----.........((((...((((((((((........))))))........((...(((((((....)))))))...))))))..)))) ( -22.70) >consensus CACGGCAACACCCUUCUU______AUCU_UCUUAUUUUCGAAUAUAAAACGAACUUUUAUGUUUAUGACUUACUUGAGUCAUUUUCACACCCCGGCC ..(((..................................((((((((((.....))))))))))(((((((....))))))).........)))... (-11.82 = -12.22 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:05 2006