Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 804,796 – 804,894 |
Length | 98 |
Max. P | 0.892006 |
Location | 804,796 – 804,894 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 87.78 |
Mean single sequence MFE | -32.93 |
Consensus MFE | -20.86 |
Energy contribution | -22.38 |
Covariance contribution | 1.52 |
Combinations/Pair | 1.08 |
Mean z-score | -3.57 |
Structure conservation index | 0.63 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.892006 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 804796 98 + 22407834 AACAAAGGGGGUCUUUAAAAUACUUUAACAAUGUGUUCGAGGCAAACAGGAUUCCCUGGCAG---GAAAUGGACGGAAGUUCAUUUCGAGAAAGCUCCGCC .....((((((((((.......(((.(((.....))).)))......))))))))))(((..---(((((((((....)))))))))(((....))).))) ( -34.92) >DroSec_CAF1 65114 98 + 1 AACAAAGGGGGUCUUUAAAAUACUUUAACAAUGUGUUCGAGGCAAACAGGAUUCCCAGGCAG---GAAAUGGACGGAAGUUCAUUUCGAGAAAGCUCCGCC ......(((((((((.......(((.(((.....))).)))......))))))))).(((..---(((((((((....)))))))))(((....))).))) ( -34.42) >DroSim_CAF1 69977 98 + 1 AACAAAGGGGGUCUUUAAAAUACUUUAACAAUGUGUUCGAGGCAAACAGGACUCCCAGGCAG---GAAAUGGACGGAAGUUCAUUUCGAGAAAGCUCCGCC ......(((((((((.......(((.(((.....))).)))......))))))))).(((..---(((((((((....)))))))))(((....))).))) ( -36.82) >DroEre_CAF1 66170 94 + 1 UACAAAGGGCGUCUUUAAAA--ACUCAACAAUGUGUUUGA-GCAAACAGGAUUC-CUGCCAG---GAAAUGGACGGAAGUUCAUUUCGUGAAAGCUGCGCC .......(((((......((--((.((....)).)))).(-((...((((...)-))).((.---(((((((((....))))))))).))...)))))))) ( -31.00) >DroYak_CAF1 69264 99 + 1 CACAAAAAGAGUCUUUAAAG--AUUCAAGAACGUGUUUGAGGCAAACAGGAUUCCCUGCCAGGAGGAAAUGGCCGGAAGUUCAUUUCGUGAAAGCUUCGCC ........((((((....))--))))............(((((...((((....)))).......((((((..(....)..))))))......)))))... ( -27.50) >consensus AACAAAGGGGGUCUUUAAAAUACUUUAACAAUGUGUUCGAGGCAAACAGGAUUCCCUGGCAG___GAAAUGGACGGAAGUUCAUUUCGAGAAAGCUCCGCC ......(((((((((.......(((.(((.....))).)))......))))))))).........(((((((((....))))))))).............. (-20.86 = -22.38 + 1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:54 2006