Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,869,768 – 7,869,873 |
Length | 105 |
Max. P | 0.921550 |
Location | 7,869,768 – 7,869,873 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 91.36 |
Mean single sequence MFE | -25.84 |
Consensus MFE | -21.72 |
Energy contribution | -21.76 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.71 |
Structure conservation index | 0.84 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.921550 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7869768 105 - 22407834 UCACAUUUAUCAUUGACGCUUUAAUGGAUCGCCAGAUGAAAAUGAUCCAUUAUUGAACAUUUCUUCAGUGUAUCUGAGUGAGUG--UUCGAUGGGUAUCUUCACUUC ....(((((((..........((((((((((...........))))))))))..((((((((.(((((.....))))).)))))--))))))))))........... ( -28.60) >DroSec_CAF1 41530 105 - 1 UCACAUUUAUCAUUGACGCUUUAAUGGAUCGCCAACUGAAAAUGAUCCAUUAUUGACCAUUUCUUCAGUGUAUCUGAGUGAGUG--UGCGAUGGGUAUCUUCACUUC .........((((((((((((((((((((((...........))))))))))...........(((((.....))))).)))))--).))))))............. ( -24.40) >DroSim_CAF1 43306 105 - 1 UCACAUUUAUCAUUGACGCUUUAAUGGAUCGCCAGCUGAAAAUGAUCCAUUAUUGACCAUUUCUUCAGUGUAUCUGAGUGAGUG--UGCGAUGGGUAUCUUCACUUC .........((((((((((((((((((((((...........))))))))))...........(((((.....))))).)))))--).))))))............. ( -24.40) >DroEre_CAF1 42215 100 - 1 UCACCUUCAUAAUUGACGCUUUAGUGGAUCGCCAGUUAAAAAUGAUCCAUUACUGACCAUUUCUUCAGUGUAUCUGAGUGAGUG--UGCGAUGGGUAUCU-----UC ..(((((((....)))(((..((((((((((...........)))))))))).....(((((.(((((.....))))).)))))--.)))..))))....-----.. ( -24.90) >DroYak_CAF1 43451 102 - 1 UCGCAUUUAUCAUUGACGCUUUAAUGGAUCGCCAUUUAAAAAUGAUCCAUUAUUGACCAUUUCUUCAGUGUAUCUGAGUGAGUGUGUGCGAUGGGUAUCU-----UC ((((((....((((.((.(..((((((((((...........))))))))))..).........((((.....)))))).)))).)))))).........-----.. ( -26.90) >consensus UCACAUUUAUCAUUGACGCUUUAAUGGAUCGCCAGCUGAAAAUGAUCCAUUAUUGACCAUUUCUUCAGUGUAUCUGAGUGAGUG__UGCGAUGGGUAUCUUCACUUC .........((((((...(..((((((((((...........))))))))))..)..(((((.(((((.....))))).)))))....))))))............. (-21.72 = -21.76 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:36:00 2006