Locus 2778

Sequence ID 2L_DroMel_CAF1
Location 7,861,363 – 7,861,470
Length 107
Max. P 0.657929
window4415

overview

Window 5

Location 7,861,363 – 7,861,470
Length 107
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 76.42
Mean single sequence MFE -21.20
Consensus MFE -6.08
Energy contribution -7.00
Covariance contribution 0.92
Combinations/Pair 1.13
Mean z-score -1.82
Structure conservation index 0.29
SVM decision value 0.26
SVM RNA-class probability 0.657929
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7861363 107 - 22407834
CGUUAAAGCUGAGGUUACCGCAAAAAAGGCUUUUAUUUUCUUGCCUUGAAAAUAAUGGACCCUUGAAAUA-AGC-----UACAUUCCAGCAGCUAAGUGUCUUCAGAAAUAAA
........((((((.(((.((....((((((.((((((((.......)))))))).))..))))......-.((-----(.......))).))...))).))))))....... ( -21.40)
>DroSec_CAF1 33217 107 - 1
CGUUUAAGCUGAGUUUACAGCAAAAAAAGCUCUUAUUUCCUUCCCUUGAAAAUAAUGGACCCUUAAAAUA-AGC-----UGCAUUCCAGCAGCUAAGUGUCUUCAGAAAUAAC
.......((((......))))...........(((((((.(((....)))......((((.(((......-(((-----(((......))))))))).))))...))))))). ( -20.90)
>DroSim_CAF1 35084 107 - 1
CGUUAAAGCUGAGGUUACUGCAAAAAAGGCUCUUAUUUCCUUUCCUUGAAAAUAAUUAACCCUUAAAAUA-AGC-----UGCAUUCCAGCAGCUAAGUAUCUUCAGAAAUAAC
.((((...((((((.((((......((((...((((((.(.......).)))))).....))))......-(((-----(((......)))))).)))).))))))...)))) ( -25.50)
>DroEre_CAF1 33819 97 - 1
UGUUUCAGCUGAGGUUACUUGAAG--AACCCUUUAUUUUCUUCCCUUGAAAAUAAUGGACCCUUCAACAAAAACUUUUGUGCAUGCCAGCAGCCAG----CAU----------
.......(((((((((..((((((--...((.((((((((.......)))))))).))...))))))....)))))...(((......)))..)))----)..---------- ( -22.90)
>DroYak_CAF1 35084 108 - 1
CGUUUCAGAUGAGGUUACUUCAAAA-AACCUUUUAUAUUUUUCCCUUGAAAAUAAUGGACCCUUAAAUAAAAACUUUUGUGCAUUCCAGCAGCUGA----CUUCAGAAAUAAC
.(((((...((((((((((.(....-.........(((((((.....))))))).((((....((((........)))).....))))).)).)))----))))))))))... ( -15.30)
>consensus
CGUUUAAGCUGAGGUUACUGCAAAAAAAGCUUUUAUUUUCUUCCCUUGAAAAUAAUGGACCCUUAAAAUA_AGC_____UGCAUUCCAGCAGCUAAGU_UCUUCAGAAAUAAC
.......((((.(....)...........((.((((((((.......)))))))).))............................))))....................... ( -6.08 =  -7.00 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:59 2006