Locus 2777

Sequence ID 2L_DroMel_CAF1
Location 7,856,106 – 7,856,198
Length 92
Max. P 0.990670
window4414

overview

Window 4

Location 7,856,106 – 7,856,198
Length 92
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 83.79
Mean single sequence MFE -24.39
Consensus MFE -23.87
Energy contribution -24.04
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -5.56
Structure conservation index 0.98
SVM decision value 2.23
SVM RNA-class probability 0.990670
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7856106 92 - 22407834
ACUCAACAGCUCCUUCACGAGCCUGCCAAAUGUAAGCGAACUUAAAAACACAUCGUUUGCAUUUGGCCCCUCUGCCCACCACUCACCCAUCC
........((((......))))..(((((((((((((((.............)))))))))))))))......................... ( -24.82)
>DroSec_CAF1 28257 92 - 1
ACUCAACAGCUCCUUCACGAGCCUGCCAAAUGUAAGCGAACUUAAAAACACGUCGUUUGCAUUUGGCCCCCCUGCCCGCCACUCACCCACCC
........((((......))))..(((((((((((((((.............)))))))))))))))......................... ( -24.82)
>DroSim_CAF1 29935 92 - 1
ACUCAACAGCUCCUUCACGAGCCUGCCAAAUGUAAGCGAACUUAAAAACACAUCGUUUGCAUUUGGCCCCCCUGCCCGCCACUCACCCACCC
........((((......))))..(((((((((((((((.............)))))))))))))))......................... ( -24.82)
>DroEre_CAF1 28503 70 - 1
ACUCAACAGCUCCUUCACGAGCCUGCCAAAUGUAAGCGAACUUAAAAACACAUCGUUUGCAUUUGGCCCC----------------------
........((((......))))..(((((((((((((((.............)))))))))))))))...---------------------- ( -24.82)
>DroYak_CAF1 30026 74 - 1
ACUCAACAGCUCCUUCACGAGCCUGCCAAAUGUAAGCGAACUUAAAAACACAUCGUUUGCAUUUGGACCCCC------------------GC
......((((((......))).)))((((((((((((((.............))))))))))))))......------------------.. ( -22.22)
>DroAna_CAF1 30347 74 - 1
ACUCAACAGCUCCUUCACGAGCCUGCCAAAUGUAAGCGAACUUAAAAACACAUCGUUUGCAUUUGGCCCCAU------------------CU
........((((......))))..(((((((((((((((.............))))))))))))))).....------------------.. ( -24.82)
>consensus
ACUCAACAGCUCCUUCACGAGCCUGCCAAAUGUAAGCGAACUUAAAAACACAUCGUUUGCAUUUGGCCCCCC__________________CC
........((((......))))..(((((((((((((((.............)))))))))))))))......................... (-23.87 = -24.04 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:58 2006