Locus 2776

Sequence ID 2L_DroMel_CAF1
Location 7,855,992 – 7,856,084
Length 92
Max. P 0.564262
window4413

overview

Window 3

Location 7,855,992 – 7,856,084
Length 92
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 93.64
Mean single sequence MFE -31.10
Consensus MFE -26.66
Energy contribution -26.06
Covariance contribution -0.60
Combinations/Pair 1.18
Mean z-score -1.24
Structure conservation index 0.86
SVM decision value 0.06
SVM RNA-class probability 0.564262
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7855992 92 + 22407834
AUAGUUGAGCUGCUGGAGCGUCACUUAAGUGCCGCUUGGAGUUUCUGCUGAUGGAGGGGGCUUUUUCAGGG---GGCAGAGUGGGCGUGAGGUGA---
...........(((...(((((((((...((((.((((((((..((.(.....).))..))))...)))).---)))))))).)))))..)))..--- ( -30.30)
>DroSec_CAF1 28143 92 + 1
AUAGUUGAGCUGCUGGAGCGUCACUUAAGUGCCGCUUGGAGUUUCUGCUGAUAGAGGGGACUUUUCCAGGG---GGCGGAGUGGGCGUGAGGUGA---
...........(((...(((((((((...((((.(((((((..(((.((.....)).)))...))))))).---)))))))).)))))..)))..--- ( -32.70)
>DroSim_CAF1 29821 92 + 1
AUAGUUGAGCUGCUGGAGCGUCACUUAAGUGCCGCUUGGAGUUUCUGCUGAUAGAGGGGGCUUUUCCAGGG---GGCGGAGUGGGCGUGAGGUGA---
...........(((...(((((((((...((((.(((((((..(((.((.....)).)))...))))))).---)))))))).)))))..)))..--- ( -31.80)
>DroEre_CAF1 28392 92 + 1
AUAGUUGAGCUGCUGGAGCGUCACUUAAGUGCCGCUUGGAGUUUCUGCUGAUGGAGGGGGCUUUUCCAGGG---GGCGGAGUGGGCGUGGGGUGA---
........(((.(....((.((((((...((((.((((((((..((.(.....).))..))...)))))).---))))))))))))..).)))..--- ( -31.40)
>DroYak_CAF1 29907 97 + 1
AUAGUUGAGCUGCUGGAGCGUCACUUAAGUGCCG-UUGGAGUUUCUGCUGAUGGAGGGGGCUUUUCCAGGGGGGGGCGGAGUGGACGUGGGGCGAGGA
.........(((((...(((((((((.....(((-(..(........)..)))).....((((..(....)..)))).)))).)))))..))).)).. ( -29.30)
>consensus
AUAGUUGAGCUGCUGGAGCGUCACUUAAGUGCCGCUUGGAGUUUCUGCUGAUGGAGGGGGCUUUUCCAGGG___GGCGGAGUGGGCGUGAGGUGA___
...........(((...(((((((((...((((.(((((((..(((.((.....)).)))...)))))))....)))))))).)))))..)))..... (-26.66 = -26.06 +  -0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:57 2006