Locus 2773

Sequence ID 2L_DroMel_CAF1
Location 7,849,796 – 7,849,892
Length 96
Max. P 0.927299
window4407

overview

Window 7

Location 7,849,796 – 7,849,892
Length 96
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 78.13
Mean single sequence MFE -18.94
Consensus MFE -12.19
Energy contribution -12.13
Covariance contribution -0.06
Combinations/Pair 1.12
Mean z-score -2.01
Structure conservation index 0.64
SVM decision value 1.18
SVM RNA-class probability 0.927299
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7849796 96 - 22407834
GCUGCCACUCAAGUGGCCCGCUAAAUGCUUCACUACCACUAGAC-GGCAGCGCCAUUAAAGUGUCGCAUUUCCUCCACUCCAACA---CCCAGCGCCACC
((((((..((.(((((...((.....)).......))))).)).-)))))).........(((.(((..................---....))).))). ( -24.15)
>DroVir_CAF1 21183 88 - 1
GCUGCCACUCAAGUGGCCCGCUAAAUGUUUCAC------UAGAC-GCCAG-GCCAUUAAAGUGUCGCAUUUCUUUCUCACCCAAA---CCCAACCCCAC-
((.(.((((..((((((((((((..........------))).)-)...)-))))))..)))).)))..................---...........- ( -17.70)
>DroEre_CAF1 22092 96 - 1
GCUGCCACUCAAGUGGCCCGCUAAAUGCUUCACUACCACUAGAC-GGCAGCGCCAUUAAAGUGUCGCAUUUCCUCCACUCCAACA---CCCAACGCCACC
((((((..((.(((((...((.....)).......))))).)).-))))))........((((..(......)..))))......---............ ( -20.70)
>DroWil_CAF1 25073 76 - 1
GUUGCCACUCAAGUGGCCCGCUAAAUGUUUCAC------UCGAC-GCCAGCACCAUUAAAGUGUCGCAUUUCCAUUCCUCAAC-----------------
...(((((....)))))......((((......------.((((-((.............))))))......)))).......----------------- ( -13.74)
>DroMoj_CAF1 22771 86 - 1
GCCA-CACUCAAGUGGCCCGCUAAAUGUUUCAC------UAGACAGCCAG-ACCAUUAAAGUGUCGCAUUUCUCACCCACCCCAA---CC--ACUACAU-
((.(-((((..(((((....((...((((....------..))))...))-.)))))..))))).))..................---..--.......- ( -16.10)
>DroAna_CAF1 24149 99 - 1
GCUGCCACUCAAGUGGCCCGCUAAAUGCUUCACUACCACUAGAC-GGCAGCGCCAUUAAAGUGUCGCAUUUCCUCCACUCCAACACCACCCAACGUCACC
((((((..((.(((((...((.....)).......))))).)).-)))))).........(((.((...........................)).))). ( -21.23)
>consensus
GCUGCCACUCAAGUGGCCCGCUAAAUGCUUCAC______UAGAC_GCCAGCGCCAUUAAAGUGUCGCAUUUCCUCCACUCCAACA___CCCAACGCCAC_
((.(((((....)))))..)).((((((..(((...........................)))..))))))............................. (-12.19 = -12.13 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:52 2006