Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,839,555 – 7,839,645 |
Length | 90 |
Max. P | 0.938214 |
Location | 7,839,555 – 7,839,645 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 73.79 |
Mean single sequence MFE | -16.68 |
Consensus MFE | -4.20 |
Energy contribution | -5.24 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.15 |
Mean z-score | -1.98 |
Structure conservation index | 0.25 |
SVM decision value | 1.12 |
SVM RNA-class probability | 0.918511 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7839555 90 + 22407834 CUAAUUUCAUACACGUAAAUAUUUACACUUGCAUGUUUACAAUGUGCAU-----------------------AUAAAAUAUAAAAAUGAGAAGUACACCCAAUGAAAGCAGUC ((..((((((....((((((((.((....)).))))))))..(((((..-----------------------....................)))))....))))))..)).. ( -11.45) >DroSec_CAF1 11600 113 + 1 CUAAUUUCAUACACGUAAAUAUUUACACGUGCACGUUUACAAUGUACAUAUGUACAUUGUACAUAUGUACAUAUAAAAUAUAAAAAAGAGAAGUACACCAAAUGAAAGGAAUC ....((((((....((((....))))..((((..(....).((((((((((((((...))))))))))))))....................)))).....))))))...... ( -25.40) >DroSim_CAF1 12745 94 + 1 AUAAUUUCAUACACGUAAAUAUUUACACGUGCAUGUUCACAAUGUACAUAUGU-------------------AUAAAAUAUAAAAAUGAGAAGUACACCAAAUAAAAGGACUC ...((((.(((((.((((....))))..((((((.......))))))...)))-------------------)).))))..................((........)).... ( -12.40) >DroEre_CAF1 11969 91 + 1 CAAAUUUGAUGCAUGUAAAUAUUUACCCUUACAUGUGUGCGAUGUGCAUAUG----------------------AAACAGAAAAAAUGGAACGUACUCCUAAUAAAAGGACUU ..........((((((((..........))))))))(((((...(.(((...----------------------...........))).).)))))((((......))))... ( -14.44) >DroYak_CAF1 12160 94 + 1 CAAAUUUCAUACAUGUAAAUAUUUACACUCGCAUGUGUACAAUUUACAUAUAU-------------------UUAAAGGAGAAACAUGGAAAGUACUCCUAAUGAAAGGACUC ....((((((..((((((((...(((((......)))))..))))))))....-------------------....(((((..((.......)).))))).))))))...... ( -19.70) >consensus CUAAUUUCAUACACGUAAAUAUUUACACUUGCAUGUUUACAAUGUACAUAUGU___________________AUAAAAUAUAAAAAUGAGAAGUACACCAAAUGAAAGGACUC ....((((((....((((((((.((....)).))))))))...((((.............................................)))).....))))))...... ( -4.20 = -5.24 + 1.04)
Location | 7,839,555 – 7,839,645 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 73.79 |
Mean single sequence MFE | -20.51 |
Consensus MFE | -6.82 |
Energy contribution | -7.42 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.31 |
Mean z-score | -2.07 |
Structure conservation index | 0.33 |
SVM decision value | 1.27 |
SVM RNA-class probability | 0.938214 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7839555 90 - 22407834 GACUGCUUUCAUUGGGUGUACUUCUCAUUUUUAUAUUUUAU-----------------------AUGCACAUUGUAAACAUGCAAGUGUAAAUAUUUACGUGUAUGAAAUUAG ..(((.(((((.((((.......))))....(((((..(((-----------------------.(((((.(((((....)))))))))).))).....)))))))))).))) ( -14.60) >DroSec_CAF1 11600 113 - 1 GAUUCCUUUCAUUUGGUGUACUUCUCUUUUUUAUAUUUUAUAUGUACAUAUGUACAAUGUACAUAUGUACAUUGUAAACGUGCACGUGUAAAUAUUUACGUGUAUGAAAUUAG .((.((........)).)).................(((((((((((((((((((...))))))))))))).))))))((((((((((........))))))))))....... ( -32.40) >DroSim_CAF1 12745 94 - 1 GAGUCCUUUUAUUUGGUGUACUUCUCAUUUUUAUAUUUUAU-------------------ACAUAUGUACAUUGUGAACAUGCACGUGUAAAUAUUUACGUGUAUGAAAUUAU .......(((((..(((((((....................-------------------......))))))))))))((((((((((........))))))))))....... ( -18.87) >DroEre_CAF1 11969 91 - 1 AAGUCCUUUUAUUAGGAGUACGUUCCAUUUUUUCUGUUU----------------------CAUAUGCACAUCGCACACAUGUAAGGGUAAAUAUUUACAUGCAUCAAAUUUG .(.((((......)))).)....................----------------------....(((.....)))..((((((((........))))))))........... ( -12.30) >DroYak_CAF1 12160 94 - 1 GAGUCCUUUCAUUAGGAGUACUUUCCAUGUUUCUCCUUUAA-------------------AUAUAUGUAAAUUGUACACAUGCGAGUGUAAAUAUUUACAUGUAUGAAAUUUG ......((((...(((((.((.......))..)))))....-------------------((((((((((((..(((((......)))))...)))))))))))))))).... ( -24.40) >consensus GAGUCCUUUCAUUAGGUGUACUUCUCAUUUUUAUAUUUUAU___________________ACAUAUGUACAUUGUAAACAUGCAAGUGUAAAUAUUUACGUGUAUGAAAUUAG ..............(((((((.............................................))))))).....((((((.(((........))).))))))....... ( -6.82 = -7.42 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:49 2006