| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,829,949 – 7,830,065 |
| Length | 116 |
| Max. P | 0.845976 |
| Location | 7,829,949 – 7,830,065 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.70 |
| Mean single sequence MFE | -18.30 |
| Consensus MFE | -5.42 |
| Energy contribution | -7.42 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.30 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.845976 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7829949 116 - 22407834 UUGGGUAAUUCUGAAAAUAGCUUCCCGCAAAACCCUAUAAAACUGUGUACCUAAACAUUGCUACUUCCUAUAAGA----AAAACAUAAACAUGUAGCAAAAUUUCCGGAAAUUACAAAAC ....(((((((((.((((.((.....)).............................(((((((...........----.............))))))).)))).))).))))))..... ( -16.16) >DroSec_CAF1 1924 116 - 1 UUGGGUGAUUCUGAAAAUAGCUUUUCACAAAACCCUAUAAAACUUUGUACCUAAACAUUGCUACGUUUUAUAGGA----AAAACAUAAACAUGUAGCAAAAUUUUCGGAAAUUACAACAC ....((((((((((((((.(((...........((((((((((...(((.........)))...)))))))))).----...((((....)))))))...)))))))).))))))..... ( -25.80) >DroSim_CAF1 2055 116 - 1 CUGGGUGAUUCUGAAAAUAGCUUCUCACAAAACCCUAUAAAACUCUGUACCUAAACAUUGCUAAGUUUUAUAGGA----AAAACAUAAACAUGUAGCAAAAUUUUCGGAAAUUACAACAC ....((((((((((((((.(((...........(((((((((((..(((.........)))..))))))))))).----...((((....)))))))...)))))))).))))))..... ( -28.50) >DroEre_CAF1 2091 104 - 1 UCAAAUGAUUCCGAAAAUAGUUUCUC--------------AACUCUGUACAUAAACAUUGCUACUUUCUAUAAAAAAAAAAAACAUUAAUAUGUUGCAAA--CUAUUGAAAUUUCUGCAC ......((.......((((((((...--------------......(((((.......)).))).................(((((....)))))..)))--)))))......))..... ( -7.82) >DroYak_CAF1 2051 112 - 1 UUAAAUGAUUCCGAAAAUAGCUUUUCACAAAACCCUAUAAAACUCUGUACCUAAACAUUGCUACGUUCCAUAACA----AAAACAUAGAGAUGUAGCUUAGUGUAUUAAAAUUACU---- ............(((((....)))))....................((((((((.....(((((((..(......----........)..))))))))))).))))..........---- ( -13.24) >consensus UUGGGUGAUUCUGAAAAUAGCUUCUCACAAAACCCUAUAAAACUCUGUACCUAAACAUUGCUACGUUCUAUAAGA____AAAACAUAAACAUGUAGCAAAAUUUACGGAAAUUACAACAC ....(((((((((................................(((......)))(((((((((........................)))))))))......))).))))))..... ( -5.42 = -7.42 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:45 2006