| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,829,739 – 7,829,834 |
| Length | 95 |
| Max. P | 0.796215 |
| Location | 7,829,739 – 7,829,834 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 75.77 |
| Mean single sequence MFE | -26.68 |
| Consensus MFE | -12.38 |
| Energy contribution | -14.22 |
| Covariance contribution | 1.84 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.796215 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7829739 95 - 22407834 UCUGCGAAACAGAAAGUACUGAGAAAACCGAAAGUGAU-------------------CCGCAUGUGCGGAUGAUAAAACCUUGUCAAAGGCCAAGGUUAU--CCGUCAAGAUUUGG ((((.....))))..............(((((.((.((-------------------((((....)))))).))..(((((((........)))))))..--.........))))) ( -24.30) >DroSec_CAF1 1696 110 - 1 UCUGCGAAACAGAAAGUACUGAGAAAACCGAAAGUGAUUUCUAAAAUAAGUG--A--CAGAAUGUGCGGAUGAUAAAACCUUGUCAAAGGGCAAGGUUAU--CCGUCAAAAUUUAG ((((((...(((......)))(((((.((....).).)))))........))--.--)))).((.(((((((.....((((((((....)))))))))))--))))))........ ( -28.70) >DroSim_CAF1 1841 110 - 1 UCUGCGAAACAGAAAGUACUGAGAACACCGAAAGUGAUUUCUAAAAUAAAUG--A--CAGAAUGUGCGGAUGAUAAAACCUUGUCAAAGGGCAAGGUUAU--CCGUCAAGAUUUAG ((((((...(((......)))((((((.(....)))..))))........))--.--)))).((.(((((((.....((((((((....)))))))))))--))))))........ ( -26.70) >DroEre_CAF1 1846 110 - 1 UCUGCGAAACAGAAAGUAUUGAGGAAACCGAAAGUGCUUUCCAAAAUAAAUG--A--CACCAUGUGUGGAUGAUAAAACCUUGUAAAAGGGCAAGGUUAG--CCGUCAAGAUUUUG ...........(((((((((..(....)....)))))))))((((((...((--(--(.(((....))).......((((((((......))))))))..--..))))..)))))) ( -29.40) >DroYak_CAF1 1843 112 - 1 UCUGCGAAACAGAAAGUAUUGAGGAAACCGAAAGUGAUUUCUAAAAUAAAUGCGA--CGACAUGUGCGGUUGAAAAAACCUUGUCAAAGGGCAAGGUUUG--CCGUCAAGAUUUAG ((((.....))))((((.((((((.((((((((....))))..........(((.--.......)))))))....((((((((((....)))))))))).--)).)))).)))).. ( -28.70) >DroAna_CAF1 1403 113 - 1 UUUAGAAAAC--GAACUCUGGCGAAAACUGAAAGUGAAUCCGAAAAUAACUUGGAACUAGUAUG-GUGGGAGGUGGAACCUUGCGAGAGGCUAAGGCCAUUUCAGCGAAAAAACAG ..........--...((((.((.(..(((...(((...(((((.......))))))))))).).-)).)))).((.....(((((((((((....))).)))).)))).....)). ( -22.30) >consensus UCUGCGAAACAGAAAGUACUGAGAAAACCGAAAGUGAUUUCUAAAAUAAAUG__A__CAGCAUGUGCGGAUGAUAAAACCUUGUCAAAGGGCAAGGUUAU__CCGUCAAGAUUUAG ((((((...(((......)))(((((.((....).).)))))......................))))))......(((((((((....))))))))).................. (-12.38 = -14.22 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:44 2006