Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,828,285 – 7,828,376 |
Length | 91 |
Max. P | 0.946476 |
Location | 7,828,285 – 7,828,376 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 95.05 |
Mean single sequence MFE | -37.96 |
Consensus MFE | -33.58 |
Energy contribution | -34.34 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.03 |
Mean z-score | -1.61 |
Structure conservation index | 0.88 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.946476 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7828285 91 + 22407834 CGCUCUUUCCAAUGGGGAGAGGCGCUGAGCGGAGAGCGCGAGAGCAUGAUUCAUGUCGUGCCCUCUUGCUCGCACAGUAGCGGCGGCUUGC ((((((((((.....))))))((((((.((...(((((.(((.(((((((....))))))).))).))))))).)))).))))))...... ( -40.30) >DroSec_CAF1 235 91 + 1 CGCUCUUUCCAAUGCGGAGAGGCGCUGAGCGGAGAGCGCGAGAGCAUGAUUCAUGUCGUGCCCUCUUGCUCGCACAGUAGCGGCGGCUUGC ((((((((((.....))))))((((((.((...(((((.(((.(((((((....))))))).))).))))))).)))).))))))...... ( -40.40) >DroSim_CAF1 236 91 + 1 CGCUCUUUCCAAUGCGGAGAGGCGCUGAGCGGAGAGCGCGAGAGCAUGAUUCAUGUCGUGCCCUCUUGCUCGCACAGUAGCGGCGGCUUGC ((((((((((.....))))))((((((.((...(((((.(((.(((((((....))))))).))).))))))).)))).))))))...... ( -40.40) >DroEre_CAF1 237 91 + 1 CGCUCUUUCCAAUGGGAAGAAGCGCUGAGCGGAGAACGCGAGAGCAUGAUUCAUGUCGUACCCUCUUGCUCACGCAGUAGCGGCGGCUUGC ((((((((((...))))))).(((.(((((((((...((....))(((((....)))))...))).)))))))))....)))......... ( -33.50) >DroYak_CAF1 234 91 + 1 CGCUCUUUUCAAUGGGAAGACGCGCUGAGCGGAGAGCGCGAGAGCAUGAUUCAUGUCGUGCCCUCUUGCUCACACAAUAGCGGCGGCUUGC .((((((((.....)))))).))((((.((.(.(((((.(((.(((((((....))))))).))).))))).)......))..)))).... ( -35.20) >consensus CGCUCUUUCCAAUGGGGAGAGGCGCUGAGCGGAGAGCGCGAGAGCAUGAUUCAUGUCGUGCCCUCUUGCUCGCACAGUAGCGGCGGCUUGC ((((((((((.....)))))))(((((....(.(((((.(((.(((((((....))))))).))).))))).)....))))))))...... (-33.58 = -34.34 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:43 2006