Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,821,480 – 7,821,583 |
Length | 103 |
Max. P | 0.500000 |
Location | 7,821,480 – 7,821,583 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 90.19 |
Mean single sequence MFE | -28.12 |
Consensus MFE | -20.53 |
Energy contribution | -21.57 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.10 |
Mean z-score | -1.63 |
Structure conservation index | 0.73 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7821480 103 - 22407834 CAGAGCUCGAAACUUGCACUUGUUGAGAUUUCAGCUGAAAUUGAUGAACUUUUGAAAUAUCGAUAGGGGCCGAAGCGAUAACUCUUAUCGAUAGCCAGCAGGG ............(((((.((((((((.(((((((..(...........)..))))))).))))))))(((.....(((((.....)))))...))).))))). ( -27.30) >DroSec_CAF1 34005 103 - 1 CAGAGCUCGAAACUUGCACUUGUUGAGAUUUCAGCUAAAAUUGAUGACCUAUUGAAAUAUCGAUAGGGGCCGAAACGAUAACUCUUAUCGAUAGCCAGCAGGG ............(((((....((((......))))............((((((((....))))))))(((.....(((((.....)))))...))).))))). ( -26.40) >DroSim_CAF1 34567 103 - 1 CAGAGCUCGAAACUUGCACUUGUUGAGAUUUCAGCUGAAAUUGAUGACCUACUGAAAUAUCGAUAGGGGCCGAAGCGAUAACUCUUAUCGAUAGCCAGCAGGG ............(((((.((((((((.(((((((..(...........)..))))))).))))))))(((.....(((((.....)))))...))).))))). ( -29.80) >DroEre_CAF1 34370 97 - 1 CAGAGCUCGAAUCUUGCACUUGUUGAGAUUUCAGCUGAAAUUUAUGACCUUUUGAUAUAUCGAUAGGG------GCGAUAGCUCUAAUCGAUAGUCAGCAGAG ...((((.(((((((((....).)))))))).))))............((.(((((.(((((((.(((------((....))))).)))))))))))).)).. ( -30.00) >DroYak_CAF1 37565 103 - 1 CAGAGCUCGAAUCUUGCACUUGUUGAGAUUUCAGCUGAAAUUUAUGACCUAUUGAUAUAUCGAUAGGGACCGCUGCGAUAACUGUUAUCGAUAAUCAGCAGAG ...((((.(((((((((....).)))))))).))))...........((((((((....))))))))....(((((((((.....))))).....)))).... ( -27.10) >consensus CAGAGCUCGAAACUUGCACUUGUUGAGAUUUCAGCUGAAAUUGAUGACCUAUUGAAAUAUCGAUAGGGGCCGAAGCGAUAACUCUUAUCGAUAGCCAGCAGGG ............(((((.((((((((.(((((((.................))))))).))))))))(((.....((((((...))))))...))).))))). (-20.53 = -21.57 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:40 2006