| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,820,314 – 7,820,409 |
| Length | 95 |
| Max. P | 0.507657 |
| Location | 7,820,314 – 7,820,409 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 81.18 |
| Mean single sequence MFE | -25.80 |
| Consensus MFE | -18.67 |
| Energy contribution | -19.08 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.72 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.507657 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7820314 95 - 22407834 ---AUUACUUACGUUUCCCAAUCUACGUAUAGCACUGCCUGUAGUGCGACCCCCGCUCCUUGAUGUGAAUCAGGUGCUCGUUGAGCUCCUUGUUCAAG ---......(((((..........)))))..((((((....)))))).......((.(((.(((....)))))).))...((((((.....)))))). ( -24.90) >DroSec_CAF1 32822 95 - 1 ---ACUACUUACGUUUCCCAAUCUACGUAUAGCACUGCCUGUAGUGCGACCCCCGCUCCUUGAUGUGAAUCAGGUGCUCGUUGAGCUCCUUGUUCAAG ---......(((((..........)))))..((((((....)))))).......((.(((.(((....)))))).))...((((((.....)))))). ( -24.90) >DroSim_CAF1 33003 95 - 1 ---ACUACUUACGUUUCCCGAUCUACGUAUAGCACUGCCUGUAGUGCGACCCCCGCUCCUUGAUGUGAAUCAGGUGCUCGUUGAGCUCCUUGUUCAAG ---......(((((..........)))))..((((((....)))))).......((.(((.(((....)))))).))...((((((.....)))))). ( -24.90) >DroEre_CAF1 32872 98 - 1 ACGAUUGCUUACGUUUCCGGAUCUACAAUUAGCACUGCCUGUAGUGCGACCCCCGCUCCUUGAUGUGAAUCAGGUGCUCGUUGAGCACCUUGUUCAAG ..........(((((...(((..........((((((....)))))).........)))..)))))((((.((((((((...)))))))).))))... ( -30.11) >DroYak_CAF1 36423 98 - 1 ACGAUUGCUUACGUUUUGGGAUCUACGUAUAGCACUGCCUGUAGUGCGACCCCCGCUCCUUGAUGUGAAUCAGGUGCUCGUUGAGCUGCUUGUUCAAG ((((..(((((((....(((......((...((((((....)))))).)).)))((.(((.(((....)))))).)).)).)))))...))))..... ( -26.40) >DroAna_CAF1 31646 88 - 1 UUUAAUACUCACAUUUCAC----------UAGCACUGCUUGUAGUGCUGGACCUUCUCCUGGAUGUAUUGCAAGUAUUCGUUGAGCUGACCGCUUAGU ...((((((..((...(((----------((((((((....))))))))).((.......)).))...))..))))))..((((((.....)))))). ( -23.60) >consensus ___AUUACUUACGUUUCCCGAUCUACGUAUAGCACUGCCUGUAGUGCGACCCCCGCUCCUUGAUGUGAAUCAGGUGCUCGUUGAGCUCCUUGUUCAAG ...............................((((((....)))))).......((.(((.(((....)))))).))...((((((.....)))))). (-18.67 = -19.08 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:39 2006