| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,785,543 – 7,785,658 |
| Length | 115 |
| Max. P | 0.552522 |
| Location | 7,785,543 – 7,785,658 |
|---|---|
| Length | 115 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.59 |
| Mean single sequence MFE | -40.30 |
| Consensus MFE | -25.29 |
| Energy contribution | -25.90 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.552522 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7785543 115 - 22407834 --AU-UUGCAUAUG--GACUUACCAUAGGACAUGCCCAUAGCUUUUCGCAAGGCAUAGGGAUCGGCGAUGGCGGAAGGCGGCAACUUCUUAGCCAAAUCGCUGAUCUGCUGCGUCAAUUG --..-((((.((((--(.....)))))((......))..........))))(((.(((((((((((((((((..((((.(....).)))).))))..)))))))))).))).)))..... ( -41.30) >DroVir_CAF1 2500 115 - 1 --GG-U--UAGUCGAGCACCUACCGAAGGACAUGCCCAUGGCCUUGCGCAGUGCAUAUUGAUCGGCAAUGGCCGAGGGCGGAAGCUUUUUGGCCAAAUCGCUGAGCUGCUGGGUUAGUUG --((-(--(((..((((.(((.....)))...(((((.(((((((((.((((....))))....)))).))))).)))))...)))).)))))).....(((((.(.....).))))).. ( -39.90) >DroPse_CAF1 2398 115 - 1 --GG-U--CUUAUGAUUACUCACCAUAAGACAUUCCCAUGGCCUUUCGCAGAGCAAAGGGAUCUGCUAUGGCGGAGGGCGGCAGCUUCUUGGCCAAGUCGCUGAUCUGCUGCGUCAGUUG --.(-(--((((((.........)))))))).........(((((((((..((((........))))...))))))))).(((((...(..((......))..)...)))))........ ( -43.40) >DroGri_CAF1 2528 118 - 1 UCGACU--GAUAUGAAGACCUACCAAAGGACAUGCCCAUUGCCUUGCGCAAGGCAUAUUGAUCGGCAAUCGCUGAAGGUGGCAGCUUCUUGGCCAAGUCACUCAGCUGCUGCGUUAGCUG ......--(((.......(((.....)))...((((((.((((((....))))))...))...)))))))(((((..(..((((((...((((...))))...))))))..).))))).. ( -38.20) >DroYak_CAF1 2569 113 - 1 --AA-GUU-AU-UG--AACUUACCAUAGGACAUGCCCAUGGCUUUUCGCAAGGCAUAGGGAUCUGCGAUGGCGGAAGGCGGCAACUUCUUAGCCAGAUCGCUGAUCUGCUGCGUCAAUUG --((-(((-..-..--))))).......((((((((....((.....))..)))))..(((((.((((((((..((((.(....).)))).))))..)))).))))).....)))..... ( -35.60) >DroPer_CAF1 2496 115 - 1 --GG-U--CUUAUGAUUACUCACCAUAAGACAUUCCCAUGGCCUUUCGCAGAGCAAAGGGAUCUGCUAUGGCGGAGGGCGGCAGCUUCUUGGCCAAGUCGCUGAUCUGCUGCGUCAGUUG --.(-(--((((((.........)))))))).........(((((((((..((((........))))...))))))))).(((((...(..((......))..)...)))))........ ( -43.40) >consensus __GG_U__CAUAUGA_GACUUACCAUAGGACAUGCCCAUGGCCUUUCGCAAGGCAUAGGGAUCGGCAAUGGCGGAAGGCGGCAGCUUCUUGGCCAAAUCGCUGAUCUGCUGCGUCAGUUG ............................(((.........(((((((((...((..........))....))))))))).(((((...(((((......)))))...))))))))..... (-25.29 = -25.90 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:34 2006