Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 799,489 – 799,584 |
Length | 95 |
Max. P | 0.517255 |
Location | 799,489 – 799,584 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 90.63 |
Mean single sequence MFE | -20.44 |
Consensus MFE | -15.78 |
Energy contribution | -15.58 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.10 |
Mean z-score | -1.45 |
Structure conservation index | 0.77 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.517255 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 799489 95 - 22407834 UCCAACUGAGUGCCCCUG--------CCAGAGUUCUGUCUCGAAACUUUUUCGGCAUAAUAAUUCAUGGCCCGACUGCCUUGGCCACAAAUUCCAAAUGCAAA ......(((((.....((--------((.(((......)))(((.....))))))).....)))))(((((..........)))))................. ( -19.30) >DroSec_CAF1 59211 95 - 1 UCCAACCGAGUGCCCAUG--------CCAGAGUUCUGUCUCGAAACUUUUUCGGCAUAAUAAUUCCUGGCCCGACUGCCUUGGCCACAAAUUCCAAAUGCAAA .........(((.(((((--------((.(((......)))(((.....))))))))..........(((......)))..)).)))................ ( -19.80) >DroSim_CAF1 63810 95 - 1 UCCAACCGAGUGCCCAUG--------CCAGAGUUCUGUCUCGAAACUUUUUCGGCAUAAUAAUUCAUGGCCCGACUGCCUUGGCCACAAAUUCCAAAUGCAAA .......((((....(((--------((.(((......)))(((.....))))))))....)))).(((((..........)))))................. ( -20.30) >DroEre_CAF1 60493 94 - 1 UCCUACCCAAUGCCCAA---------CCAGGGCUCUGUCUCGAAACUUUUUCGGCAUAAUAAUUCAUGGCCCGCCUGCCUUGGCCACAAAUUCCAAAUGCAAA .......((..((((..---------...))))..))...((((.....))))((((...((((..(((((..........)))))..))))....))))... ( -21.10) >DroYak_CAF1 63326 103 - 1 UCCAACCCAAAGCCCAUGCCCAUGCCACAGAGUUUUGUCUCGAAACUUUUUCGGCAUAAUAAUUCAUGGCCCGACUGCCUUGGCCACAAAUUCCAAAUGCAAA ................(((..(((((..(((((((((...)))))))))...)))))...((((..(((((..........)))))..))))......))).. ( -21.70) >consensus UCCAACCGAGUGCCCAUG________CCAGAGUUCUGUCUCGAAACUUUUUCGGCAUAAUAAUUCAUGGCCCGACUGCCUUGGCCACAAAUUCCAAAUGCAAA .........(((((...............(((......)))(((.....))))))))...((((..(((((..........)))))..))))........... (-15.78 = -15.58 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:50 2006