Locus 2757

Sequence ID	2L_DroMel_CAF1
Location	7,763,745 – 7,763,837
Length	92
Max. P	0.599556

overview

Window 9

Location	7,763,745 – 7,763,837
Length	92
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	92.37
Mean single sequence MFE	-26.42
Consensus MFE	-21.78
Energy contribution	-21.42
Covariance contribution	-0.36
Combinations/Pair	1.13
Mean z-score	-1.36
Structure conservation index	0.82
SVM decision value	0.13
SVM RNA-class probability	0.599556
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7763745 92 - 22407834
-CCCCCUUUUUUUUGUGUUGCCCCAACUCGUUGGGGAUAAAAAGCUUCCCCAGAAGACGCCGAGCGUCAGCGAGGAAUAAUGUAUUGUUAUUC
-.........................(((((((((((.........)))))....(((((...)))))))))))(((((((.....))))))) ( -26.10)
>DroSec_CAF1 11237 93 - 1
CCCCCAUUUUUUUUGUGUUGCCCCAACUCGUUGGGGAUAAAAAGCUUCGCCAGAAGACGCCGAGCGUCAGCGAGGAAUAAUGUAUUGUUAUUC
........((((((((....((((((....))))))))))))))((((((.....(((((...))))).))))))((((((.....)))))). ( -25.10)
>DroSim_CAF1 11562 93 - 1
ACCCCCUUUUUUUUGUGUUGCCCCAACUCGUUGGGGAUAAAAAGCUUCGCCAGAAGACGCCGAGCGUCAGCGAGGAAUAAUGUAUUGUUAUUC
........((((((((....((((((....))))))))))))))((((((.....(((((...))))).))))))((((((.....)))))). ( -25.10)
>DroEre_CAF1 11615 87 - 1
UCU------UUUUUGUGUUGCCCCAACUCGCUGGGGAUAAAAAGCUUCCCCAGAAGGCGCCGAGCGUCAGCGAGGAAUAAUGUAUUGUUAUUC
...------.................(((((((((((.........)))))....(((((...)))))))))))(((((((.....))))))) ( -27.90)
>DroYak_CAF1 11760 93 - 1
CCUUCUUUUUUUUCGUGUUGCCCCAACUCGUUGGGGAUAAAAAGCUUCGCCAGAAGGCGUCGAGCGUCAGCGAGGAAUAAUGUAUUGUUAUUC
...........(((((....((((((....)))))).......((((((((....))))..))))....)))))(((((((.....))))))) ( -27.90)
>consensus
CCCCCCUUUUUUUUGUGUUGCCCCAACUCGUUGGGGAUAAAAAGCUUCGCCAGAAGACGCCGAGCGUCAGCGAGGAAUAAUGUAUUGUUAUUC
...........(((((....((((((....))))))...................(((((...))))).)))))(((((((.....))))))) (-21.78 = -21.42 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:35:26 2006